Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2168

Experiment: m.b. Vancomycin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2167 and B158DRAFT_2168 overlap by 4 nucleotidesB158DRAFT_2168 and B158DRAFT_2169 are separated by 1 nucleotidesB158DRAFT_2169 and B158DRAFT_2170 are separated by 55 nucleotides B158DRAFT_2167: B158DRAFT_2167 - probable DNA repair protein, at 309,108 to 311,849 _2167 B158DRAFT_2168: B158DRAFT_2168 - ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains), at 311,846 to 315,262 _2168 B158DRAFT_2169: B158DRAFT_2169 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 315,264 to 315,806 _2169 B158DRAFT_2170: B158DRAFT_2170 - Uncharacterized protein conserved in bacteria, at 315,862 to 317,709 _2170 Position (kb) 311 312 313 314 315 316Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 310.936 kb on + strand, within B158DRAFT_2167at 310.954 kb on - strand, within B158DRAFT_2167at 310.954 kb on - strand, within B158DRAFT_2167at 311.056 kb on + strand, within B158DRAFT_2167at 311.196 kb on - strand, within B158DRAFT_2167at 311.292 kb on + strand, within B158DRAFT_2167at 311.387 kb on + strand, within B158DRAFT_2167at 311.395 kb on - strand, within B158DRAFT_2167at 311.461 kb on + strand, within B158DRAFT_2167at 311.469 kb on - strand, within B158DRAFT_2167at 311.476 kb on - strand, within B158DRAFT_2167at 311.528 kb on + strand, within B158DRAFT_2167at 311.613 kb on + strandat 311.621 kb on - strandat 311.638 kb on - strandat 311.779 kb on + strandat 311.787 kb on - strandat 311.903 kb on - strandat 311.903 kb on - strandat 312.052 kb on + strandat 312.062 kb on + strandat 312.069 kb on + strandat 312.077 kb on - strandat 312.077 kb on - strandat 312.077 kb on - strandat 312.077 kb on - strandat 312.095 kb on + strandat 312.095 kb on + strandat 312.102 kb on + strandat 312.102 kb on + strandat 312.103 kb on - strandat 312.103 kb on - strandat 312.103 kb on - strandat 312.110 kb on - strandat 312.120 kb on - strandat 312.228 kb on - strand, within B158DRAFT_2168at 312.295 kb on + strand, within B158DRAFT_2168at 312.303 kb on - strand, within B158DRAFT_2168at 312.331 kb on + strand, within B158DRAFT_2168at 312.341 kb on + strand, within B158DRAFT_2168at 312.381 kb on - strand, within B158DRAFT_2168at 312.453 kb on + strand, within B158DRAFT_2168at 312.453 kb on + strand, within B158DRAFT_2168at 312.486 kb on + strand, within B158DRAFT_2168at 312.501 kb on + strand, within B158DRAFT_2168at 312.501 kb on + strand, within B158DRAFT_2168at 312.511 kb on + strand, within B158DRAFT_2168at 312.807 kb on + strand, within B158DRAFT_2168at 312.815 kb on - strand, within B158DRAFT_2168at 312.962 kb on + strand, within B158DRAFT_2168at 312.970 kb on - strand, within B158DRAFT_2168at 313.321 kb on - strand, within B158DRAFT_2168at 313.384 kb on - strand, within B158DRAFT_2168at 313.481 kb on + strand, within B158DRAFT_2168at 313.569 kb on + strand, within B158DRAFT_2168at 313.569 kb on + strand, within B158DRAFT_2168at 313.574 kb on + strand, within B158DRAFT_2168at 313.614 kb on + strand, within B158DRAFT_2168at 313.619 kb on + strand, within B158DRAFT_2168at 313.622 kb on - strand, within B158DRAFT_2168at 313.741 kb on + strand, within B158DRAFT_2168at 313.741 kb on + strand, within B158DRAFT_2168at 313.741 kb on + strand, within B158DRAFT_2168at 313.741 kb on + strand, within B158DRAFT_2168at 313.741 kb on + strand, within B158DRAFT_2168at 313.741 kb on + strand, within B158DRAFT_2168at 313.741 kb on + strand, within B158DRAFT_2168at 313.749 kb on - strand, within B158DRAFT_2168at 313.749 kb on - strand, within B158DRAFT_2168at 313.749 kb on - strand, within B158DRAFT_2168at 313.749 kb on - strand, within B158DRAFT_2168at 313.863 kb on - strand, within B158DRAFT_2168at 313.937 kb on + strand, within B158DRAFT_2168at 313.951 kb on + strand, within B158DRAFT_2168at 314.029 kb on + strand, within B158DRAFT_2168at 314.037 kb on - strand, within B158DRAFT_2168at 314.037 kb on - strand, within B158DRAFT_2168at 314.037 kb on - strand, within B158DRAFT_2168at 314.037 kb on - strand, within B158DRAFT_2168at 314.037 kb on - strand, within B158DRAFT_2168at 314.037 kb on - strand, within B158DRAFT_2168at 314.037 kb on - strand, within B158DRAFT_2168at 314.037 kb on - strand, within B158DRAFT_2168at 314.037 kb on - strand, within B158DRAFT_2168at 314.038 kb on - strand, within B158DRAFT_2168at 314.086 kb on + strand, within B158DRAFT_2168at 314.094 kb on - strand, within B158DRAFT_2168at 314.183 kb on + strand, within B158DRAFT_2168at 314.189 kb on + strand, within B158DRAFT_2168at 314.266 kb on + strand, within B158DRAFT_2168at 314.281 kb on - strand, within B158DRAFT_2168at 314.338 kb on + strand, within B158DRAFT_2168at 314.344 kb on - strand, within B158DRAFT_2168at 314.346 kb on - strand, within B158DRAFT_2168at 314.398 kb on + strand, within B158DRAFT_2168at 314.521 kb on + strand, within B158DRAFT_2168at 314.637 kb on - strand, within B158DRAFT_2168at 314.644 kb on + strand, within B158DRAFT_2168at 314.652 kb on - strand, within B158DRAFT_2168at 314.654 kb on + strand, within B158DRAFT_2168at 314.654 kb on + strand, within B158DRAFT_2168at 314.675 kb on + strand, within B158DRAFT_2168at 314.978 kb on + strandat 314.980 kb on - strandat 314.986 kb on - strandat 315.028 kb on + strandat 315.447 kb on - strand, within B158DRAFT_2169at 315.597 kb on - strand, within B158DRAFT_2169at 315.770 kb on + strandat 315.770 kb on + strandat 315.925 kb on - strandat 316.012 kb on + strandat 316.020 kb on - strandat 316.044 kb on - strandat 316.045 kb on + strandat 316.045 kb on + strandat 316.053 kb on - strand, within B158DRAFT_2170at 316.053 kb on - strand, within B158DRAFT_2170at 316.053 kb on - strand, within B158DRAFT_2170at 316.053 kb on - strand, within B158DRAFT_2170at 316.148 kb on - strand, within B158DRAFT_2170at 316.230 kb on - strand, within B158DRAFT_2170

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.125 mg/ml
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310,936 + B158DRAFT_2167 0.67 -1.0
310,954 - B158DRAFT_2167 0.67 -2.1
310,954 - B158DRAFT_2167 0.67 -1.0
311,056 + B158DRAFT_2167 0.71 -1.4
311,196 - B158DRAFT_2167 0.76 -0.6
311,292 + B158DRAFT_2167 0.80 -1.9
311,387 + B158DRAFT_2167 0.83 -1.2
311,395 - B158DRAFT_2167 0.83 -2.0
311,461 + B158DRAFT_2167 0.86 -0.6
311,469 - B158DRAFT_2167 0.86 -0.5
311,476 - B158DRAFT_2167 0.86 -2.4
311,528 + B158DRAFT_2167 0.88 -0.4
311,613 + -1.1
311,621 - -1.6
311,638 - +2.0
311,779 + -0.1
311,787 - -0.8
311,903 - -1.0
311,903 - -0.8
312,052 + +0.4
312,062 + -2.2
312,069 + -1.9
312,077 - +1.1
312,077 - -1.4
312,077 - +0.1
312,077 - -1.4
312,095 + -3.3
312,095 + -0.9
312,102 + -1.3
312,102 + -1.6
312,103 - -0.4
312,103 - -0.9
312,103 - -0.9
312,110 - +1.1
312,120 - -0.0
312,228 - B158DRAFT_2168 0.11 -0.4
312,295 + B158DRAFT_2168 0.13 +0.1
312,303 - B158DRAFT_2168 0.13 +0.8
312,331 + B158DRAFT_2168 0.14 -0.6
312,341 + B158DRAFT_2168 0.14 -0.8
312,381 - B158DRAFT_2168 0.16 -1.4
312,453 + B158DRAFT_2168 0.18 -1.1
312,453 + B158DRAFT_2168 0.18 +0.1
312,486 + B158DRAFT_2168 0.19 -0.8
312,501 + B158DRAFT_2168 0.19 -0.2
312,501 + B158DRAFT_2168 0.19 -0.3
312,511 + B158DRAFT_2168 0.19 -0.4
312,807 + B158DRAFT_2168 0.28 -0.7
312,815 - B158DRAFT_2168 0.28 -1.6
312,962 + B158DRAFT_2168 0.33 -0.4
312,970 - B158DRAFT_2168 0.33 +0.1
313,321 - B158DRAFT_2168 0.43 +0.4
313,384 - B158DRAFT_2168 0.45 -1.3
313,481 + B158DRAFT_2168 0.48 -1.3
313,569 + B158DRAFT_2168 0.50 -2.8
313,569 + B158DRAFT_2168 0.50 -1.9
313,574 + B158DRAFT_2168 0.51 +0.9
313,614 + B158DRAFT_2168 0.52 +1.1
313,619 + B158DRAFT_2168 0.52 -2.0
313,622 - B158DRAFT_2168 0.52 +0.8
313,741 + B158DRAFT_2168 0.55 -0.8
313,741 + B158DRAFT_2168 0.55 -1.2
313,741 + B158DRAFT_2168 0.55 +0.2
313,741 + B158DRAFT_2168 0.55 -0.4
313,741 + B158DRAFT_2168 0.55 -0.1
313,741 + B158DRAFT_2168 0.55 +1.4
313,741 + B158DRAFT_2168 0.55 -1.0
313,749 - B158DRAFT_2168 0.56 -1.3
313,749 - B158DRAFT_2168 0.56 -0.5
313,749 - B158DRAFT_2168 0.56 -1.5
313,749 - B158DRAFT_2168 0.56 -0.4
313,863 - B158DRAFT_2168 0.59 -0.9
313,937 + B158DRAFT_2168 0.61 -1.4
313,951 + B158DRAFT_2168 0.62 -0.7
314,029 + B158DRAFT_2168 0.64 -0.6
314,037 - B158DRAFT_2168 0.64 -1.2
314,037 - B158DRAFT_2168 0.64 -2.2
314,037 - B158DRAFT_2168 0.64 -1.1
314,037 - B158DRAFT_2168 0.64 +0.8
314,037 - B158DRAFT_2168 0.64 -1.5
314,037 - B158DRAFT_2168 0.64 -2.5
314,037 - B158DRAFT_2168 0.64 -1.4
314,037 - B158DRAFT_2168 0.64 -1.3
314,037 - B158DRAFT_2168 0.64 -0.2
314,038 - B158DRAFT_2168 0.64 -0.6
314,086 + B158DRAFT_2168 0.66 +1.4
314,094 - B158DRAFT_2168 0.66 -1.8
314,183 + B158DRAFT_2168 0.68 -0.9
314,189 + B158DRAFT_2168 0.69 -1.0
314,266 + B158DRAFT_2168 0.71 -0.8
314,281 - B158DRAFT_2168 0.71 -0.0
314,338 + B158DRAFT_2168 0.73 -0.3
314,344 - B158DRAFT_2168 0.73 -0.9
314,346 - B158DRAFT_2168 0.73 -1.0
314,398 + B158DRAFT_2168 0.75 -1.3
314,521 + B158DRAFT_2168 0.78 -1.0
314,637 - B158DRAFT_2168 0.82 -1.3
314,644 + B158DRAFT_2168 0.82 -0.9
314,652 - B158DRAFT_2168 0.82 +0.4
314,654 + B158DRAFT_2168 0.82 -0.2
314,654 + B158DRAFT_2168 0.82 +0.4
314,675 + B158DRAFT_2168 0.83 -0.9
314,978 + -0.9
314,980 - -0.2
314,986 - -2.5
315,028 + +0.4
315,447 - B158DRAFT_2169 0.34 -1.4
315,597 - B158DRAFT_2169 0.61 -0.3
315,770 + -0.1
315,770 + -0.1
315,925 - -0.2
316,012 + +0.0
316,020 - -0.4
316,044 - -0.1
316,045 + +0.2
316,045 + -2.8
316,053 - B158DRAFT_2170 0.10 -0.3
316,053 - B158DRAFT_2170 0.10 -1.0
316,053 - B158DRAFT_2170 0.10 +0.6
316,053 - B158DRAFT_2170 0.10 +0.4
316,148 - B158DRAFT_2170 0.15 -0.6
316,230 - B158DRAFT_2170 0.20 -0.2

Or see this region's nucleotide sequence