Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1060

Experiment: m.b. Vancomycin 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1059 and B158DRAFT_1060 are separated by 94 nucleotidesB158DRAFT_1060 and B158DRAFT_1061 are separated by 15 nucleotidesB158DRAFT_1061 and B158DRAFT_1062 are separated by 87 nucleotides B158DRAFT_1059: B158DRAFT_1059 - ABC-type Na+ efflux pump, permease component, at 1,099,547 to 1,100,791 _1059 B158DRAFT_1060: B158DRAFT_1060 - FOG: LysM repeat, at 1,100,886 to 1,102,430 _1060 B158DRAFT_1061: B158DRAFT_1061 - hydroxyacylglutathione hydrolase, at 1,102,446 to 1,103,246 _1061 B158DRAFT_1062: B158DRAFT_1062 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 1,103,334 to 1,104,053 _1062 Position (kb) 1100 1101 1102 1103Strain fitness (log2 ratio) -2 -1 0 1at 1099.991 kb on + strand, within B158DRAFT_1059at 1100.026 kb on + strand, within B158DRAFT_1059at 1100.034 kb on - strand, within B158DRAFT_1059at 1100.034 kb on - strand, within B158DRAFT_1059at 1100.155 kb on + strand, within B158DRAFT_1059at 1100.473 kb on - strand, within B158DRAFT_1059at 1100.531 kb on + strand, within B158DRAFT_1059at 1100.539 kb on - strand, within B158DRAFT_1059at 1100.544 kb on - strand, within B158DRAFT_1059at 1100.565 kb on + strand, within B158DRAFT_1059at 1100.573 kb on - strand, within B158DRAFT_1059at 1100.671 kb on + strandat 1100.671 kb on + strandat 1100.679 kb on - strandat 1100.679 kb on - strandat 1100.758 kb on - strandat 1100.878 kb on - strandat 1100.987 kb on + strandat 1100.987 kb on + strandat 1100.987 kb on + strandat 1101.013 kb on + strandat 1101.023 kb on + strandat 1101.023 kb on + strandat 1101.024 kb on + strandat 1101.031 kb on - strandat 1101.097 kb on + strand, within B158DRAFT_1060at 1101.102 kb on + strand, within B158DRAFT_1060at 1101.102 kb on + strand, within B158DRAFT_1060at 1101.110 kb on - strand, within B158DRAFT_1060at 1101.173 kb on - strand, within B158DRAFT_1060at 1101.326 kb on + strand, within B158DRAFT_1060at 1101.335 kb on + strand, within B158DRAFT_1060at 1101.343 kb on - strand, within B158DRAFT_1060at 1101.371 kb on + strand, within B158DRAFT_1060at 1101.384 kb on - strand, within B158DRAFT_1060at 1101.428 kb on + strand, within B158DRAFT_1060at 1101.472 kb on - strand, within B158DRAFT_1060at 1101.472 kb on - strand, within B158DRAFT_1060at 1101.473 kb on - strand, within B158DRAFT_1060at 1101.483 kb on + strand, within B158DRAFT_1060at 1101.491 kb on - strand, within B158DRAFT_1060at 1101.517 kb on - strand, within B158DRAFT_1060at 1101.528 kb on + strand, within B158DRAFT_1060at 1101.538 kb on + strand, within B158DRAFT_1060at 1101.577 kb on + strand, within B158DRAFT_1060at 1101.577 kb on + strand, within B158DRAFT_1060at 1101.585 kb on - strand, within B158DRAFT_1060at 1101.585 kb on - strand, within B158DRAFT_1060at 1101.651 kb on + strand, within B158DRAFT_1060at 1101.659 kb on - strand, within B158DRAFT_1060at 1101.698 kb on + strand, within B158DRAFT_1060at 1101.706 kb on - strand, within B158DRAFT_1060at 1101.706 kb on - strand, within B158DRAFT_1060at 1101.708 kb on - strand, within B158DRAFT_1060at 1101.801 kb on - strand, within B158DRAFT_1060at 1101.956 kb on - strand, within B158DRAFT_1060at 1101.972 kb on - strand, within B158DRAFT_1060at 1101.984 kb on + strand, within B158DRAFT_1060at 1101.984 kb on + strand, within B158DRAFT_1060at 1102.139 kb on + strand, within B158DRAFT_1060at 1102.147 kb on - strand, within B158DRAFT_1060at 1102.147 kb on - strand, within B158DRAFT_1060at 1102.155 kb on + strand, within B158DRAFT_1060at 1102.185 kb on + strand, within B158DRAFT_1060at 1102.215 kb on + strand, within B158DRAFT_1060at 1102.215 kb on + strand, within B158DRAFT_1060at 1102.223 kb on - strand, within B158DRAFT_1060at 1102.223 kb on - strand, within B158DRAFT_1060at 1102.262 kb on - strand, within B158DRAFT_1060at 1102.290 kb on - strandat 1102.292 kb on + strandat 1102.292 kb on + strandat 1102.292 kb on + strandat 1102.312 kb on + strandat 1102.387 kb on - strandat 1102.492 kb on + strandat 1102.492 kb on + strandat 1102.500 kb on - strandat 1102.500 kb on - strandat 1102.500 kb on - strandat 1102.528 kb on + strand, within B158DRAFT_1061at 1102.528 kb on + strand, within B158DRAFT_1061at 1102.544 kb on + strand, within B158DRAFT_1061at 1102.544 kb on + strand, within B158DRAFT_1061at 1102.552 kb on - strand, within B158DRAFT_1061at 1102.613 kb on + strand, within B158DRAFT_1061at 1102.620 kb on + strand, within B158DRAFT_1061at 1102.650 kb on + strand, within B158DRAFT_1061at 1102.655 kb on + strand, within B158DRAFT_1061at 1102.655 kb on + strand, within B158DRAFT_1061at 1102.655 kb on + strand, within B158DRAFT_1061at 1102.655 kb on + strand, within B158DRAFT_1061at 1102.655 kb on + strand, within B158DRAFT_1061at 1102.655 kb on + strand, within B158DRAFT_1061at 1102.655 kb on + strand, within B158DRAFT_1061at 1102.663 kb on - strand, within B158DRAFT_1061at 1102.663 kb on - strand, within B158DRAFT_1061at 1102.663 kb on - strand, within B158DRAFT_1061at 1102.663 kb on - strand, within B158DRAFT_1061at 1102.698 kb on + strand, within B158DRAFT_1061at 1102.763 kb on - strand, within B158DRAFT_1061at 1102.797 kb on - strand, within B158DRAFT_1061at 1102.815 kb on - strand, within B158DRAFT_1061at 1102.821 kb on - strand, within B158DRAFT_1061at 1102.860 kb on + strand, within B158DRAFT_1061at 1102.885 kb on + strand, within B158DRAFT_1061at 1102.886 kb on - strand, within B158DRAFT_1061at 1102.966 kb on - strand, within B158DRAFT_1061at 1102.972 kb on - strand, within B158DRAFT_1061at 1103.009 kb on - strand, within B158DRAFT_1061at 1103.034 kb on + strand, within B158DRAFT_1061at 1103.034 kb on + strand, within B158DRAFT_1061at 1103.034 kb on + strand, within B158DRAFT_1061at 1103.034 kb on + strand, within B158DRAFT_1061at 1103.042 kb on - strand, within B158DRAFT_1061at 1103.097 kb on - strand, within B158DRAFT_1061at 1103.115 kb on + strand, within B158DRAFT_1061at 1103.123 kb on - strand, within B158DRAFT_1061at 1103.123 kb on - strand, within B158DRAFT_1061at 1103.130 kb on + strand, within B158DRAFT_1061at 1103.130 kb on + strand, within B158DRAFT_1061at 1103.130 kb on + strand, within B158DRAFT_1061at 1103.138 kb on - strand, within B158DRAFT_1061at 1103.138 kb on - strand, within B158DRAFT_1061at 1103.138 kb on - strand, within B158DRAFT_1061at 1103.216 kb on + strandat 1103.224 kb on - strandat 1103.253 kb on + strandat 1103.261 kb on - strandat 1103.264 kb on + strandat 1103.264 kb on + strandat 1103.264 kb on + strandat 1103.272 kb on + strandat 1103.272 kb on - strandat 1103.272 kb on - strandat 1103.272 kb on - strandat 1103.285 kb on - strandat 1103.306 kb on + strandat 1103.306 kb on + strandat 1103.314 kb on - strandat 1103.314 kb on - strandat 1103.338 kb on + strandat 1103.338 kb on + strandat 1103.346 kb on - strandat 1103.346 kb on - strandat 1103.346 kb on - strandat 1103.346 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.125 mg/ml
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1,099,991 + B158DRAFT_1059 0.36 -1.4
1,100,026 + B158DRAFT_1059 0.38 -1.1
1,100,034 - B158DRAFT_1059 0.39 -2.4
1,100,034 - B158DRAFT_1059 0.39 -1.4
1,100,155 + B158DRAFT_1059 0.49 -1.4
1,100,473 - B158DRAFT_1059 0.74 -1.5
1,100,531 + B158DRAFT_1059 0.79 -1.1
1,100,539 - B158DRAFT_1059 0.80 -2.0
1,100,544 - B158DRAFT_1059 0.80 -0.8
1,100,565 + B158DRAFT_1059 0.82 -0.8
1,100,573 - B158DRAFT_1059 0.82 -1.5
1,100,671 + -1.3
1,100,671 + -1.2
1,100,679 - -1.1
1,100,679 - -0.5
1,100,758 - -1.5
1,100,878 - +0.0
1,100,987 + +0.3
1,100,987 + +0.7
1,100,987 + +0.2
1,101,013 + -0.2
1,101,023 + +0.3
1,101,023 + +0.0
1,101,024 + +0.2
1,101,031 - -0.4
1,101,097 + B158DRAFT_1060 0.14 -0.6
1,101,102 + B158DRAFT_1060 0.14 -1.0
1,101,102 + B158DRAFT_1060 0.14 -0.5
1,101,110 - B158DRAFT_1060 0.14 +0.0
1,101,173 - B158DRAFT_1060 0.19 +0.1
1,101,326 + B158DRAFT_1060 0.28 -0.2
1,101,335 + B158DRAFT_1060 0.29 -0.9
1,101,343 - B158DRAFT_1060 0.30 -0.6
1,101,371 + B158DRAFT_1060 0.31 -0.8
1,101,384 - B158DRAFT_1060 0.32 -0.8
1,101,428 + B158DRAFT_1060 0.35 -0.5
1,101,472 - B158DRAFT_1060 0.38 -0.6
1,101,472 - B158DRAFT_1060 0.38 -1.6
1,101,473 - B158DRAFT_1060 0.38 -0.3
1,101,483 + B158DRAFT_1060 0.39 -0.6
1,101,491 - B158DRAFT_1060 0.39 -0.6
1,101,517 - B158DRAFT_1060 0.41 -0.9
1,101,528 + B158DRAFT_1060 0.42 -1.3
1,101,538 + B158DRAFT_1060 0.42 -0.6
1,101,577 + B158DRAFT_1060 0.45 -0.3
1,101,577 + B158DRAFT_1060 0.45 -1.0
1,101,585 - B158DRAFT_1060 0.45 +0.0
1,101,585 - B158DRAFT_1060 0.45 -1.0
1,101,651 + B158DRAFT_1060 0.50 -2.4
1,101,659 - B158DRAFT_1060 0.50 -0.8
1,101,698 + B158DRAFT_1060 0.53 -1.6
1,101,706 - B158DRAFT_1060 0.53 -0.9
1,101,706 - B158DRAFT_1060 0.53 -0.6
1,101,708 - B158DRAFT_1060 0.53 -0.4
1,101,801 - B158DRAFT_1060 0.59 -0.8
1,101,956 - B158DRAFT_1060 0.69 -0.2
1,101,972 - B158DRAFT_1060 0.70 -1.5
1,101,984 + B158DRAFT_1060 0.71 -1.0
1,101,984 + B158DRAFT_1060 0.71 -0.6
1,102,139 + B158DRAFT_1060 0.81 -1.3
1,102,147 - B158DRAFT_1060 0.82 -1.3
1,102,147 - B158DRAFT_1060 0.82 -1.1
1,102,155 + B158DRAFT_1060 0.82 -1.5
1,102,185 + B158DRAFT_1060 0.84 -0.3
1,102,215 + B158DRAFT_1060 0.86 -1.4
1,102,215 + B158DRAFT_1060 0.86 -1.1
1,102,223 - B158DRAFT_1060 0.87 -1.0
1,102,223 - B158DRAFT_1060 0.87 -0.6
1,102,262 - B158DRAFT_1060 0.89 -1.1
1,102,290 - -0.6
1,102,292 + -0.8
1,102,292 + -1.1
1,102,292 + -0.5
1,102,312 + -1.5
1,102,387 - -0.2
1,102,492 + -0.2
1,102,492 + +0.1
1,102,500 - +0.4
1,102,500 - +0.7
1,102,500 - +0.2
1,102,528 + B158DRAFT_1061 0.10 +0.3
1,102,528 + B158DRAFT_1061 0.10 +0.6
1,102,544 + B158DRAFT_1061 0.12 -0.1
1,102,544 + B158DRAFT_1061 0.12 -1.1
1,102,552 - B158DRAFT_1061 0.13 +0.2
1,102,613 + B158DRAFT_1061 0.21 -0.8
1,102,620 + B158DRAFT_1061 0.22 +0.4
1,102,650 + B158DRAFT_1061 0.25 +1.0
1,102,655 + B158DRAFT_1061 0.26 -0.0
1,102,655 + B158DRAFT_1061 0.26 -0.3
1,102,655 + B158DRAFT_1061 0.26 -0.7
1,102,655 + B158DRAFT_1061 0.26 -0.2
1,102,655 + B158DRAFT_1061 0.26 +0.5
1,102,655 + B158DRAFT_1061 0.26 -0.5
1,102,655 + B158DRAFT_1061 0.26 -0.1
1,102,663 - B158DRAFT_1061 0.27 -0.1
1,102,663 - B158DRAFT_1061 0.27 -0.1
1,102,663 - B158DRAFT_1061 0.27 +0.1
1,102,663 - B158DRAFT_1061 0.27 +0.1
1,102,698 + B158DRAFT_1061 0.31 +0.0
1,102,763 - B158DRAFT_1061 0.40 -0.3
1,102,797 - B158DRAFT_1061 0.44 -0.2
1,102,815 - B158DRAFT_1061 0.46 +0.1
1,102,821 - B158DRAFT_1061 0.47 -0.4
1,102,860 + B158DRAFT_1061 0.52 -0.3
1,102,885 + B158DRAFT_1061 0.55 +0.4
1,102,886 - B158DRAFT_1061 0.55 +0.3
1,102,966 - B158DRAFT_1061 0.65 +1.3
1,102,972 - B158DRAFT_1061 0.66 -0.2
1,103,009 - B158DRAFT_1061 0.70 +0.1
1,103,034 + B158DRAFT_1061 0.73 -0.1
1,103,034 + B158DRAFT_1061 0.73 -0.0
1,103,034 + B158DRAFT_1061 0.73 +0.5
1,103,034 + B158DRAFT_1061 0.73 -0.1
1,103,042 - B158DRAFT_1061 0.74 +0.2
1,103,097 - B158DRAFT_1061 0.81 -0.2
1,103,115 + B158DRAFT_1061 0.84 +0.4
1,103,123 - B158DRAFT_1061 0.85 +0.3
1,103,123 - B158DRAFT_1061 0.85 +0.4
1,103,130 + B158DRAFT_1061 0.85 +0.1
1,103,130 + B158DRAFT_1061 0.85 -0.5
1,103,130 + B158DRAFT_1061 0.85 -0.4
1,103,138 - B158DRAFT_1061 0.86 -0.7
1,103,138 - B158DRAFT_1061 0.86 +0.1
1,103,138 - B158DRAFT_1061 0.86 -0.1
1,103,216 + -0.2
1,103,224 - -0.3
1,103,253 + -0.1
1,103,261 - -0.4
1,103,264 + -0.7
1,103,264 + +0.1
1,103,264 + +0.1
1,103,272 + -0.4
1,103,272 - -0.1
1,103,272 - -0.3
1,103,272 - -0.6
1,103,285 - -0.4
1,103,306 + -0.5
1,103,306 + -0.7
1,103,314 - -1.0
1,103,314 - -1.3
1,103,338 + +0.1
1,103,338 + -0.9
1,103,346 - -1.5
1,103,346 - -0.6
1,103,346 - -0.6
1,103,346 - -0.9

Or see this region's nucleotide sequence