Experiment: Bacitracin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_5002 and PfGW456L13_5003 are separated by 22 nucleotides PfGW456L13_5003 and PfGW456L13_5004 are separated by 114 nucleotides PfGW456L13_5004 and PfGW456L13_5005 are separated by 17 nucleotides PfGW456L13_5005 and PfGW456L13_5006 are separated by 11 nucleotides PfGW456L13_5006 and PfGW456L13_5007 overlap by 1 nucleotides
PfGW456L13_5002 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase (EC 2.5.1.7), at 5,580,511 to 5,581,776
_5002
PfGW456L13_5003 - YrbA protein, at 5,581,799 to 5,582,038
_5003
PfGW456L13_5004 - Uncharacterized protein YrbB, at 5,582,153 to 5,582,437
_5004
PfGW456L13_5005 - Uncharacterized ABC transporter, auxiliary component YrbC, at 5,582,455 to 5,583,108
_5005
PfGW456L13_5006 - Uncharacterized ABC transporter, periplasmic component YrbD, at 5,583,120 to 5,583,587
_5006
PfGW456L13_5007 - Uncharacterized ABC transporter, permease component YrbE, at 5,583,587 to 5,584,384
_5007
Position (kb) 5582
5583
5584 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5581.891 kb on - strand, within PfGW456L13_5003 at 5581.891 kb on - strand, within PfGW456L13_5003 at 5581.891 kb on - strand, within PfGW456L13_5003 at 5581.983 kb on - strand, within PfGW456L13_5003 at 5582.083 kb on - strand at 5582.083 kb on - strand at 5582.083 kb on - strand at 5582.143 kb on + strand at 5582.143 kb on + strand at 5582.143 kb on + strand at 5582.144 kb on - strand at 5582.144 kb on - strand at 5582.144 kb on - strand at 5582.144 kb on - strand at 5582.144 kb on - strand at 5582.144 kb on - strand at 5582.144 kb on - strand at 5582.144 kb on - strand at 5582.144 kb on - strand at 5582.660 kb on + strand, within PfGW456L13_5005 at 5582.673 kb on - strand, within PfGW456L13_5005 at 5582.708 kb on - strand, within PfGW456L13_5005 at 5582.708 kb on - strand, within PfGW456L13_5005 at 5582.708 kb on - strand, within PfGW456L13_5005 at 5582.708 kb on - strand, within PfGW456L13_5005 at 5582.708 kb on - strand, within PfGW456L13_5005 at 5582.716 kb on - strand, within PfGW456L13_5005 at 5582.769 kb on - strand, within PfGW456L13_5005 at 5582.790 kb on - strand, within PfGW456L13_5005 at 5582.853 kb on + strand, within PfGW456L13_5005 at 5582.889 kb on + strand, within PfGW456L13_5005 at 5582.890 kb on - strand, within PfGW456L13_5005 at 5582.937 kb on - strand, within PfGW456L13_5005 at 5582.960 kb on + strand, within PfGW456L13_5005 at 5582.961 kb on - strand, within PfGW456L13_5005 at 5582.961 kb on - strand, within PfGW456L13_5005 at 5582.995 kb on - strand, within PfGW456L13_5005 at 5583.100 kb on - strand at 5583.111 kb on - strand at 5583.111 kb on - strand at 5583.257 kb on - strand, within PfGW456L13_5006 at 5583.257 kb on - strand, within PfGW456L13_5006 at 5583.288 kb on - strand, within PfGW456L13_5006 at 5583.468 kb on - strand, within PfGW456L13_5006 at 5583.469 kb on + strand, within PfGW456L13_5006 at 5583.653 kb on + strand at 5583.653 kb on + strand at 5583.653 kb on + strand at 5583.653 kb on + strand at 5583.653 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 1 mg/ml remove 5,581,891 - PfGW456L13_5003 0.38 -0.1 5,581,891 - PfGW456L13_5003 0.38 -0.6 5,581,891 - PfGW456L13_5003 0.38 -0.6 5,581,983 - PfGW456L13_5003 0.77 -0.5 5,582,083 - -0.1 5,582,083 - -0.9 5,582,083 - +0.1 5,582,143 + -0.8 5,582,143 + -3.3 5,582,143 + -1.9 5,582,144 - -0.5 5,582,144 - +0.0 5,582,144 - -0.9 5,582,144 - -0.8 5,582,144 - -2.4 5,582,144 - +0.2 5,582,144 - -0.0 5,582,144 - +0.3 5,582,144 - +0.1 5,582,660 + PfGW456L13_5005 0.31 -2.4 5,582,673 - PfGW456L13_5005 0.33 -3.0 5,582,708 - PfGW456L13_5005 0.39 -1.5 5,582,708 - PfGW456L13_5005 0.39 -1.4 5,582,708 - PfGW456L13_5005 0.39 -2.2 5,582,708 - PfGW456L13_5005 0.39 -0.1 5,582,708 - PfGW456L13_5005 0.39 -1.6 5,582,716 - PfGW456L13_5005 0.40 -3.0 5,582,769 - PfGW456L13_5005 0.48 -0.3 5,582,790 - PfGW456L13_5005 0.51 -0.6 5,582,853 + PfGW456L13_5005 0.61 -2.5 5,582,889 + PfGW456L13_5005 0.66 -1.4 5,582,890 - PfGW456L13_5005 0.67 -1.4 5,582,937 - PfGW456L13_5005 0.74 -2.1 5,582,960 + PfGW456L13_5005 0.77 -0.1 5,582,961 - PfGW456L13_5005 0.77 -0.1 5,582,961 - PfGW456L13_5005 0.77 -2.2 5,582,995 - PfGW456L13_5005 0.83 -2.2 5,583,100 - -2.2 5,583,111 - -3.1 5,583,111 - -2.6 5,583,257 - PfGW456L13_5006 0.29 -0.6 5,583,257 - PfGW456L13_5006 0.29 -2.1 5,583,288 - PfGW456L13_5006 0.36 -1.1 5,583,468 - PfGW456L13_5006 0.74 -1.6 5,583,469 + PfGW456L13_5006 0.75 -1.9 5,583,653 + -1.9 5,583,653 + -1.4 5,583,653 + -0.6 5,583,653 + -2.2 5,583,653 + -2.2
Or see this region's nucleotide sequence