Experiment: Bacitracin 1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4913 and PfGW456L13_4914 are separated by 33 nucleotides PfGW456L13_4914 and PfGW456L13_4915 are separated by 27 nucleotides PfGW456L13_4915 and PfGW456L13_4916 are separated by 30 nucleotides PfGW456L13_4916 and PfGW456L13_4917 overlap by 4 nucleotides
PfGW456L13_4913 - DipZ protein, at 5,490,042 to 5,491,817
_4913
PfGW456L13_4914 - Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12), at 5,491,851 to 5,492,369
_4914
PfGW456L13_4915 - hypothetical protein, at 5,492,397 to 5,492,636
_4915
PfGW456L13_4916 - Phosphate regulon transcriptional regulatory protein PhoB (SphR), at 5,492,667 to 5,493,386
_4916
PfGW456L13_4917 - Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-), at 5,493,383 to 5,494,903
_4917
Position (kb) 5492
5493
5494 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5491.795 kb on + strand at 5491.796 kb on - strand at 5491.825 kb on - strand at 5492.152 kb on + strand, within PfGW456L13_4914 at 5492.152 kb on + strand, within PfGW456L13_4914 at 5492.153 kb on - strand, within PfGW456L13_4914 at 5492.153 kb on - strand, within PfGW456L13_4914 at 5492.153 kb on - strand, within PfGW456L13_4914 at 5492.343 kb on + strand at 5492.365 kb on + strand at 5492.365 kb on + strand at 5492.365 kb on + strand at 5492.365 kb on + strand at 5492.365 kb on + strand at 5492.365 kb on + strand at 5492.365 kb on + strand at 5492.366 kb on - strand at 5492.366 kb on - strand at 5492.366 kb on - strand at 5492.366 kb on - strand at 5492.366 kb on - strand at 5492.400 kb on + strand at 5492.400 kb on + strand at 5492.400 kb on + strand at 5492.401 kb on - strand at 5492.401 kb on - strand at 5492.401 kb on - strand at 5492.401 kb on - strand at 5492.413 kb on - strand at 5492.413 kb on - strand at 5492.413 kb on - strand at 5492.449 kb on - strand, within PfGW456L13_4915 at 5492.463 kb on - strand, within PfGW456L13_4915 at 5492.494 kb on + strand, within PfGW456L13_4915 at 5492.494 kb on + strand, within PfGW456L13_4915 at 5492.495 kb on - strand, within PfGW456L13_4915 at 5492.495 kb on - strand, within PfGW456L13_4915 at 5492.495 kb on - strand, within PfGW456L13_4915 at 5492.495 kb on - strand, within PfGW456L13_4915 at 5492.495 kb on - strand, within PfGW456L13_4915 at 5492.495 kb on - strand, within PfGW456L13_4915 at 5492.495 kb on - strand, within PfGW456L13_4915 at 5492.666 kb on + strand at 5492.667 kb on - strand at 5492.667 kb on - strand at 5492.706 kb on - strand at 5492.706 kb on - strand at 5492.711 kb on + strand at 5492.712 kb on - strand at 5492.970 kb on + strand, within PfGW456L13_4916 at 5492.970 kb on + strand, within PfGW456L13_4916 at 5492.971 kb on - strand, within PfGW456L13_4916 at 5492.971 kb on - strand, within PfGW456L13_4916 at 5493.171 kb on + strand, within PfGW456L13_4916 at 5493.171 kb on + strand, within PfGW456L13_4916 at 5493.172 kb on - strand, within PfGW456L13_4916 at 5493.172 kb on - strand, within PfGW456L13_4916 at 5493.172 kb on - strand, within PfGW456L13_4916 at 5493.635 kb on + strand, within PfGW456L13_4917 at 5493.635 kb on + strand, within PfGW456L13_4917 at 5493.635 kb on + strand, within PfGW456L13_4917 at 5493.635 kb on + strand, within PfGW456L13_4917 at 5493.636 kb on - strand, within PfGW456L13_4917 at 5493.636 kb on - strand, within PfGW456L13_4917 at 5493.837 kb on - strand, within PfGW456L13_4917 at 5493.843 kb on - strand, within PfGW456L13_4917 at 5493.843 kb on - strand, within PfGW456L13_4917 at 5493.843 kb on - strand, within PfGW456L13_4917 at 5494.386 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 1 mg/ml remove 5,491,795 + +0.8 5,491,796 - -0.4 5,491,825 - -0.3 5,492,152 + PfGW456L13_4914 0.58 +0.2 5,492,152 + PfGW456L13_4914 0.58 -1.5 5,492,153 - PfGW456L13_4914 0.58 +0.1 5,492,153 - PfGW456L13_4914 0.58 +0.2 5,492,153 - PfGW456L13_4914 0.58 -0.6 5,492,343 + +0.5 5,492,365 + +0.4 5,492,365 + -0.1 5,492,365 + +0.6 5,492,365 + -1.1 5,492,365 + +1.2 5,492,365 + -0.1 5,492,365 + -0.2 5,492,366 - +0.9 5,492,366 - -0.3 5,492,366 - -0.3 5,492,366 - -0.4 5,492,366 - +0.1 5,492,400 + +0.2 5,492,400 + +0.5 5,492,400 + -0.6 5,492,401 - +0.3 5,492,401 - -0.2 5,492,401 - -0.1 5,492,401 - -0.3 5,492,413 - +0.3 5,492,413 - +0.3 5,492,413 - -0.2 5,492,449 - PfGW456L13_4915 0.22 +0.1 5,492,463 - PfGW456L13_4915 0.28 +0.9 5,492,494 + PfGW456L13_4915 0.40 -0.7 5,492,494 + PfGW456L13_4915 0.40 +0.2 5,492,495 - PfGW456L13_4915 0.41 +0.6 5,492,495 - PfGW456L13_4915 0.41 +0.6 5,492,495 - PfGW456L13_4915 0.41 +0.9 5,492,495 - PfGW456L13_4915 0.41 -1.1 5,492,495 - PfGW456L13_4915 0.41 +0.3 5,492,495 - PfGW456L13_4915 0.41 -0.8 5,492,495 - PfGW456L13_4915 0.41 +0.4 5,492,666 + +1.3 5,492,667 - +1.9 5,492,667 - +0.2 5,492,706 - -0.0 5,492,706 - -0.8 5,492,711 + +0.4 5,492,712 - -1.1 5,492,970 + PfGW456L13_4916 0.42 +0.9 5,492,970 + PfGW456L13_4916 0.42 +0.1 5,492,971 - PfGW456L13_4916 0.42 +0.9 5,492,971 - PfGW456L13_4916 0.42 -0.3 5,493,171 + PfGW456L13_4916 0.70 -0.3 5,493,171 + PfGW456L13_4916 0.70 -1.8 5,493,172 - PfGW456L13_4916 0.70 -1.6 5,493,172 - PfGW456L13_4916 0.70 -0.5 5,493,172 - PfGW456L13_4916 0.70 -1.6 5,493,635 + PfGW456L13_4917 0.17 +0.5 5,493,635 + PfGW456L13_4917 0.17 -0.2 5,493,635 + PfGW456L13_4917 0.17 +0.4 5,493,635 + PfGW456L13_4917 0.17 +1.1 5,493,636 - PfGW456L13_4917 0.17 -0.1 5,493,636 - PfGW456L13_4917 0.17 +0.5 5,493,837 - PfGW456L13_4917 0.30 -1.3 5,493,843 - PfGW456L13_4917 0.30 +0.0 5,493,843 - PfGW456L13_4917 0.30 +0.7 5,493,843 - PfGW456L13_4917 0.30 -0.8 5,494,386 + +0.9
Or see this region's nucleotide sequence