Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4750

Experiment: Bacitracin 1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_4749 and PfGW456L13_4750 are separated by 51 nucleotidesPfGW456L13_4750 and PfGW456L13_4751 are separated by 421 nucleotides PfGW456L13_4749 - Lysyl-tRNA synthetase (class II) (EC 6.1.1.6), at 5,291,611 to 5,293,176 _4749 PfGW456L13_4750 - Peptide chain release factor 2; programmed frameshift-containing, at 5,293,228 to 5,294,109 _4750 PfGW456L13_4751 - diguanylate cyclase (GGDEF domain) with PAS/PAC sensor, at 5,294,531 to 5,295,532 _4751 Position (kb) 5293 5294 5295Strain fitness (log2 ratio) -3 -2 -1 0 1at 5293.124 kb on - strandat 5294.421 kb on + strandat 5294.421 kb on + strandat 5294.422 kb on - strandat 5294.422 kb on - strandat 5294.463 kb on + strandat 5294.472 kb on - strandat 5294.472 kb on - strandat 5294.635 kb on + strand, within PfGW456L13_4751at 5294.635 kb on + strand, within PfGW456L13_4751at 5294.635 kb on + strand, within PfGW456L13_4751at 5294.636 kb on - strand, within PfGW456L13_4751at 5294.636 kb on - strand, within PfGW456L13_4751at 5294.686 kb on + strand, within PfGW456L13_4751at 5294.687 kb on - strand, within PfGW456L13_4751at 5294.895 kb on + strand, within PfGW456L13_4751at 5294.895 kb on + strand, within PfGW456L13_4751at 5294.896 kb on - strand, within PfGW456L13_4751at 5294.896 kb on - strand, within PfGW456L13_4751at 5294.896 kb on - strand, within PfGW456L13_4751at 5294.896 kb on - strand, within PfGW456L13_4751at 5294.907 kb on + strand, within PfGW456L13_4751at 5294.908 kb on - strand, within PfGW456L13_4751at 5294.979 kb on + strand, within PfGW456L13_4751at 5294.979 kb on + strand, within PfGW456L13_4751at 5294.979 kb on + strand, within PfGW456L13_4751at 5294.980 kb on - strand, within PfGW456L13_4751at 5294.980 kb on - strand, within PfGW456L13_4751

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 1 mg/ml
remove
5,293,124 - -0.7
5,294,421 + -3.0
5,294,421 + -0.4
5,294,422 - -0.4
5,294,422 - -2.3
5,294,463 + -0.0
5,294,472 - +1.1
5,294,472 - +0.5
5,294,635 + PfGW456L13_4751 0.10 +1.2
5,294,635 + PfGW456L13_4751 0.10 -0.4
5,294,635 + PfGW456L13_4751 0.10 -2.0
5,294,636 - PfGW456L13_4751 0.10 +1.6
5,294,636 - PfGW456L13_4751 0.10 -0.4
5,294,686 + PfGW456L13_4751 0.15 -0.5
5,294,687 - PfGW456L13_4751 0.16 -1.8
5,294,895 + PfGW456L13_4751 0.36 +0.2
5,294,895 + PfGW456L13_4751 0.36 -0.2
5,294,896 - PfGW456L13_4751 0.36 -0.2
5,294,896 - PfGW456L13_4751 0.36 +1.0
5,294,896 - PfGW456L13_4751 0.36 +0.7
5,294,896 - PfGW456L13_4751 0.36 -0.3
5,294,907 + PfGW456L13_4751 0.38 -0.1
5,294,908 - PfGW456L13_4751 0.38 +1.3
5,294,979 + PfGW456L13_4751 0.45 -0.7
5,294,979 + PfGW456L13_4751 0.45 -0.6
5,294,979 + PfGW456L13_4751 0.45 +0.3
5,294,980 - PfGW456L13_4751 0.45 -0.4
5,294,980 - PfGW456L13_4751 0.45 +0.9

Or see this region's nucleotide sequence