Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4683

Experiment: Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4682 and PfGW456L13_4683 are separated by 107 nucleotidesPfGW456L13_4683 and PfGW456L13_4684 are separated by 155 nucleotidesPfGW456L13_4684 and PfGW456L13_4685 are separated by 56 nucleotides PfGW456L13_4682 - S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284), at 5,219,438 to 5,220,550 _4682 PfGW456L13_4683 - Transcriptional regulator, LysR family, in formaldehyde detoxification operon, at 5,220,658 to 5,221,554 _4683 PfGW456L13_4684 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60), at 5,221,710 to 5,222,357 _4684 PfGW456L13_4685 - Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage, at 5,222,414 to 5,222,692 _4685 Position (kb) 5220 5221 5222Strain fitness (log2 ratio) -2 -1 0 1 2at 5219.984 kb on - strand, within PfGW456L13_4682at 5219.984 kb on - strand, within PfGW456L13_4682at 5220.118 kb on - strand, within PfGW456L13_4682at 5220.144 kb on + strand, within PfGW456L13_4682at 5220.144 kb on + strand, within PfGW456L13_4682at 5220.145 kb on - strand, within PfGW456L13_4682at 5220.145 kb on - strand, within PfGW456L13_4682at 5220.145 kb on - strand, within PfGW456L13_4682at 5220.145 kb on - strand, within PfGW456L13_4682at 5220.169 kb on - strand, within PfGW456L13_4682at 5220.185 kb on - strand, within PfGW456L13_4682at 5220.285 kb on + strand, within PfGW456L13_4682at 5220.285 kb on + strand, within PfGW456L13_4682at 5220.285 kb on + strand, within PfGW456L13_4682at 5220.285 kb on + strand, within PfGW456L13_4682at 5220.286 kb on - strand, within PfGW456L13_4682at 5220.286 kb on - strand, within PfGW456L13_4682at 5220.286 kb on - strand, within PfGW456L13_4682at 5220.286 kb on - strand, within PfGW456L13_4682at 5220.414 kb on + strand, within PfGW456L13_4682at 5220.414 kb on + strand, within PfGW456L13_4682at 5220.414 kb on + strand, within PfGW456L13_4682at 5220.415 kb on - strand, within PfGW456L13_4682at 5220.569 kb on + strandat 5220.569 kb on + strandat 5220.570 kb on - strandat 5220.588 kb on + strandat 5220.588 kb on + strandat 5220.588 kb on + strandat 5220.589 kb on - strandat 5220.591 kb on + strandat 5220.591 kb on + strandat 5220.591 kb on + strandat 5220.591 kb on + strandat 5220.591 kb on + strandat 5220.591 kb on + strandat 5220.591 kb on + strandat 5220.591 kb on + strandat 5220.592 kb on - strandat 5220.592 kb on - strandat 5220.592 kb on - strandat 5220.592 kb on - strandat 5220.592 kb on - strandat 5220.592 kb on - strandat 5220.592 kb on - strandat 5220.592 kb on - strandat 5220.592 kb on - strandat 5220.592 kb on - strandat 5220.592 kb on - strandat 5220.592 kb on - strandat 5220.592 kb on - strandat 5220.592 kb on - strandat 5220.592 kb on - strandat 5220.631 kb on - strandat 5220.777 kb on - strand, within PfGW456L13_4683at 5221.016 kb on - strand, within PfGW456L13_4683at 5221.174 kb on + strand, within PfGW456L13_4683at 5221.174 kb on + strand, within PfGW456L13_4683at 5221.174 kb on + strand, within PfGW456L13_4683at 5221.174 kb on + strand, within PfGW456L13_4683at 5221.175 kb on - strand, within PfGW456L13_4683at 5221.175 kb on - strand, within PfGW456L13_4683at 5221.175 kb on - strand, within PfGW456L13_4683at 5221.175 kb on - strand, within PfGW456L13_4683at 5221.186 kb on + strand, within PfGW456L13_4683at 5221.279 kb on + strand, within PfGW456L13_4683at 5221.280 kb on - strand, within PfGW456L13_4683at 5221.344 kb on - strand, within PfGW456L13_4683at 5221.344 kb on - strand, within PfGW456L13_4683at 5221.344 kb on - strand, within PfGW456L13_4683at 5221.375 kb on + strand, within PfGW456L13_4683at 5221.375 kb on + strand, within PfGW456L13_4683at 5221.375 kb on + strand, within PfGW456L13_4683at 5221.376 kb on - strand, within PfGW456L13_4683at 5221.376 kb on - strand, within PfGW456L13_4683at 5221.376 kb on - strand, within PfGW456L13_4683at 5221.378 kb on + strand, within PfGW456L13_4683at 5221.378 kb on + strand, within PfGW456L13_4683at 5221.378 kb on + strand, within PfGW456L13_4683at 5221.378 kb on + strand, within PfGW456L13_4683at 5221.378 kb on + strand, within PfGW456L13_4683at 5221.378 kb on + strand, within PfGW456L13_4683at 5221.379 kb on - strand, within PfGW456L13_4683at 5221.379 kb on - strand, within PfGW456L13_4683at 5221.379 kb on - strand, within PfGW456L13_4683at 5221.379 kb on - strand, within PfGW456L13_4683at 5221.379 kb on - strand, within PfGW456L13_4683at 5221.379 kb on - strand, within PfGW456L13_4683at 5221.379 kb on - strand, within PfGW456L13_4683at 5221.379 kb on - strand, within PfGW456L13_4683at 5221.511 kb on - strandat 5221.586 kb on + strandat 5221.586 kb on + strandat 5221.587 kb on - strandat 5222.412 kb on - strandat 5222.412 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 1 mg/ml
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5,219,984 - PfGW456L13_4682 0.49 -0.1
5,219,984 - PfGW456L13_4682 0.49 -0.3
5,220,118 - PfGW456L13_4682 0.61 +0.6
5,220,144 + PfGW456L13_4682 0.63 +0.4
5,220,144 + PfGW456L13_4682 0.63 -0.7
5,220,145 - PfGW456L13_4682 0.64 +0.3
5,220,145 - PfGW456L13_4682 0.64 +0.8
5,220,145 - PfGW456L13_4682 0.64 +0.3
5,220,145 - PfGW456L13_4682 0.64 +1.4
5,220,169 - PfGW456L13_4682 0.66 -0.4
5,220,185 - PfGW456L13_4682 0.67 +0.6
5,220,285 + PfGW456L13_4682 0.76 -1.4
5,220,285 + PfGW456L13_4682 0.76 +0.7
5,220,285 + PfGW456L13_4682 0.76 +0.2
5,220,285 + PfGW456L13_4682 0.76 +0.7
5,220,286 - PfGW456L13_4682 0.76 +0.5
5,220,286 - PfGW456L13_4682 0.76 +0.9
5,220,286 - PfGW456L13_4682 0.76 +0.8
5,220,286 - PfGW456L13_4682 0.76 +0.1
5,220,414 + PfGW456L13_4682 0.88 -0.7
5,220,414 + PfGW456L13_4682 0.88 -2.6
5,220,414 + PfGW456L13_4682 0.88 -2.0
5,220,415 - PfGW456L13_4682 0.88 -0.9
5,220,569 + -0.5
5,220,569 + +0.0
5,220,570 - -1.3
5,220,588 + +2.0
5,220,588 + -0.4
5,220,588 + -0.3
5,220,589 - -0.1
5,220,591 + +2.4
5,220,591 + +0.4
5,220,591 + -0.8
5,220,591 + +0.4
5,220,591 + -0.9
5,220,591 + +0.1
5,220,591 + +1.5
5,220,591 + -1.6
5,220,592 - +0.4
5,220,592 - -0.3
5,220,592 - -0.6
5,220,592 - -0.7
5,220,592 - +0.2
5,220,592 - +0.4
5,220,592 - +0.5
5,220,592 - -0.6
5,220,592 - -0.4
5,220,592 - +0.9
5,220,592 - +0.4
5,220,592 - -0.1
5,220,592 - +1.1
5,220,592 - -0.0
5,220,592 - +0.7
5,220,631 - +0.6
5,220,777 - PfGW456L13_4683 0.13 -0.3
5,221,016 - PfGW456L13_4683 0.40 -0.9
5,221,174 + PfGW456L13_4683 0.58 +0.9
5,221,174 + PfGW456L13_4683 0.58 +0.2
5,221,174 + PfGW456L13_4683 0.58 +0.1
5,221,174 + PfGW456L13_4683 0.58 -1.4
5,221,175 - PfGW456L13_4683 0.58 -0.7
5,221,175 - PfGW456L13_4683 0.58 +0.3
5,221,175 - PfGW456L13_4683 0.58 -0.8
5,221,175 - PfGW456L13_4683 0.58 +0.4
5,221,186 + PfGW456L13_4683 0.59 -1.0
5,221,279 + PfGW456L13_4683 0.69 -0.2
5,221,280 - PfGW456L13_4683 0.69 -2.1
5,221,344 - PfGW456L13_4683 0.76 -0.6
5,221,344 - PfGW456L13_4683 0.76 +1.3
5,221,344 - PfGW456L13_4683 0.76 -1.1
5,221,375 + PfGW456L13_4683 0.80 -0.5
5,221,375 + PfGW456L13_4683 0.80 -0.2
5,221,375 + PfGW456L13_4683 0.80 +0.5
5,221,376 - PfGW456L13_4683 0.80 +0.2
5,221,376 - PfGW456L13_4683 0.80 +0.2
5,221,376 - PfGW456L13_4683 0.80 +0.1
5,221,378 + PfGW456L13_4683 0.80 -0.0
5,221,378 + PfGW456L13_4683 0.80 -2.3
5,221,378 + PfGW456L13_4683 0.80 +0.2
5,221,378 + PfGW456L13_4683 0.80 -1.0
5,221,378 + PfGW456L13_4683 0.80 -0.5
5,221,378 + PfGW456L13_4683 0.80 -0.7
5,221,379 - PfGW456L13_4683 0.80 +0.3
5,221,379 - PfGW456L13_4683 0.80 -0.1
5,221,379 - PfGW456L13_4683 0.80 -0.3
5,221,379 - PfGW456L13_4683 0.80 -1.3
5,221,379 - PfGW456L13_4683 0.80 -0.5
5,221,379 - PfGW456L13_4683 0.80 -1.2
5,221,379 - PfGW456L13_4683 0.80 -0.9
5,221,379 - PfGW456L13_4683 0.80 -0.3
5,221,511 - -0.4
5,221,586 + -0.1
5,221,586 + -0.7
5,221,587 - +1.5
5,222,412 - +0.2
5,222,412 - +0.1

Or see this region's nucleotide sequence