Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4378

Experiment: Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4376 and PfGW456L13_4377 overlap by 4 nucleotidesPfGW456L13_4377 and PfGW456L13_4378 overlap by 4 nucleotidesPfGW456L13_4378 and PfGW456L13_4379 overlap by 19 nucleotides PfGW456L13_4376 - methyltransferase, putative, at 4,886,890 to 4,888,116 _4376 PfGW456L13_4377 - dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13), at 4,888,113 to 4,888,673 _4377 PfGW456L13_4378 - Similar to CDP-glucose 4,6-dehydratase (EC 4.2.1.45), at 4,888,670 to 4,889,752 _4378 PfGW456L13_4379 - Glucose-1-phosphate cytidylyltransferase (EC 2.7.7.33), at 4,889,734 to 4,890,507 _4379 Position (kb) 4888 4889 4890Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4887.776 kb on + strand, within PfGW456L13_4376at 4887.776 kb on + strand, within PfGW456L13_4376at 4887.777 kb on - strand, within PfGW456L13_4376at 4887.789 kb on - strand, within PfGW456L13_4376at 4887.863 kb on + strandat 4887.863 kb on + strand, within PfGW456L13_4376at 4887.864 kb on - strand, within PfGW456L13_4376at 4887.864 kb on - strand, within PfGW456L13_4376at 4887.864 kb on - strand, within PfGW456L13_4376at 4887.908 kb on + strand, within PfGW456L13_4376at 4887.909 kb on - strand, within PfGW456L13_4376at 4887.915 kb on - strand, within PfGW456L13_4376at 4887.947 kb on + strand, within PfGW456L13_4376at 4887.947 kb on + strand, within PfGW456L13_4376at 4887.947 kb on + strand, within PfGW456L13_4376at 4887.948 kb on - strand, within PfGW456L13_4376at 4887.948 kb on - strand, within PfGW456L13_4376at 4887.948 kb on - strand, within PfGW456L13_4376at 4887.948 kb on - strand, within PfGW456L13_4376at 4887.948 kb on - strand, within PfGW456L13_4376at 4888.040 kb on + strandat 4888.040 kb on + strandat 4888.040 kb on + strandat 4888.040 kb on + strandat 4888.041 kb on - strandat 4888.116 kb on + strandat 4888.178 kb on + strand, within PfGW456L13_4377at 4888.252 kb on + strand, within PfGW456L13_4377at 4888.253 kb on - strand, within PfGW456L13_4377at 4888.253 kb on - strand, within PfGW456L13_4377at 4888.270 kb on + strand, within PfGW456L13_4377at 4888.271 kb on - strand, within PfGW456L13_4377at 4888.271 kb on - strand, within PfGW456L13_4377at 4888.271 kb on - strand, within PfGW456L13_4377at 4888.874 kb on + strand, within PfGW456L13_4378at 4889.229 kb on + strand, within PfGW456L13_4378at 4889.229 kb on + strand, within PfGW456L13_4378at 4889.230 kb on - strand, within PfGW456L13_4378at 4889.271 kb on + strand, within PfGW456L13_4378at 4889.272 kb on - strand, within PfGW456L13_4378at 4889.334 kb on + strand, within PfGW456L13_4378at 4889.334 kb on + strand, within PfGW456L13_4378at 4889.335 kb on - strand, within PfGW456L13_4378at 4889.335 kb on - strand, within PfGW456L13_4378at 4889.335 kb on - strand, within PfGW456L13_4378at 4889.430 kb on + strand, within PfGW456L13_4378at 4889.430 kb on + strand, within PfGW456L13_4378at 4889.430 kb on + strand, within PfGW456L13_4378at 4889.430 kb on + strand, within PfGW456L13_4378at 4889.431 kb on - strand, within PfGW456L13_4378at 4889.431 kb on - strand, within PfGW456L13_4378at 4889.431 kb on - strand, within PfGW456L13_4378at 4889.431 kb on - strand, within PfGW456L13_4378at 4890.043 kb on + strand, within PfGW456L13_4379at 4890.128 kb on + strand, within PfGW456L13_4379at 4890.128 kb on + strand, within PfGW456L13_4379at 4890.132 kb on + strand, within PfGW456L13_4379at 4890.133 kb on - strand, within PfGW456L13_4379at 4890.242 kb on + strand, within PfGW456L13_4379at 4890.242 kb on + strand, within PfGW456L13_4379at 4890.243 kb on - strand, within PfGW456L13_4379at 4890.243 kb on - strand, within PfGW456L13_4379at 4890.243 kb on - strand, within PfGW456L13_4379at 4890.308 kb on + strand, within PfGW456L13_4379at 4890.308 kb on + strand, within PfGW456L13_4379at 4890.308 kb on + strand, within PfGW456L13_4379at 4890.308 kb on + strand, within PfGW456L13_4379at 4890.308 kb on + strand, within PfGW456L13_4379at 4890.308 kb on + strand, within PfGW456L13_4379at 4890.309 kb on - strand, within PfGW456L13_4379at 4890.309 kb on - strand, within PfGW456L13_4379at 4890.309 kb on - strand, within PfGW456L13_4379at 4890.309 kb on - strand, within PfGW456L13_4379at 4890.309 kb on - strand, within PfGW456L13_4379at 4890.335 kb on + strand, within PfGW456L13_4379at 4890.336 kb on - strand, within PfGW456L13_4379at 4890.336 kb on - strand, within PfGW456L13_4379at 4890.344 kb on + strand, within PfGW456L13_4379at 4890.344 kb on + strand, within PfGW456L13_4379at 4890.386 kb on + strand, within PfGW456L13_4379at 4890.387 kb on - strand, within PfGW456L13_4379at 4890.387 kb on - strand, within PfGW456L13_4379at 4890.496 kb on - strandat 4890.547 kb on + strandat 4890.547 kb on + strandat 4890.548 kb on - strandat 4890.548 kb on - strandat 4890.548 kb on - strandat 4890.634 kb on + strandat 4890.634 kb on + strandat 4890.634 kb on + strandat 4890.635 kb on - strandat 4890.636 kb on + strandat 4890.637 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 1 mg/ml
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4,887,776 + PfGW456L13_4376 0.72 -0.3
4,887,776 + PfGW456L13_4376 0.72 +0.4
4,887,777 - PfGW456L13_4376 0.72 -1.0
4,887,789 - PfGW456L13_4376 0.73 -0.8
4,887,863 + +1.5
4,887,863 + PfGW456L13_4376 0.79 +0.2
4,887,864 - PfGW456L13_4376 0.79 +0.1
4,887,864 - PfGW456L13_4376 0.79 -0.7
4,887,864 - PfGW456L13_4376 0.79 +0.3
4,887,908 + PfGW456L13_4376 0.83 -0.3
4,887,909 - PfGW456L13_4376 0.83 +0.8
4,887,915 - PfGW456L13_4376 0.84 -0.7
4,887,947 + PfGW456L13_4376 0.86 -1.2
4,887,947 + PfGW456L13_4376 0.86 -0.4
4,887,947 + PfGW456L13_4376 0.86 -1.2
4,887,948 - PfGW456L13_4376 0.86 +0.9
4,887,948 - PfGW456L13_4376 0.86 +0.8
4,887,948 - PfGW456L13_4376 0.86 +0.4
4,887,948 - PfGW456L13_4376 0.86 -2.0
4,887,948 - PfGW456L13_4376 0.86 +0.2
4,888,040 + +0.3
4,888,040 + -0.1
4,888,040 + -0.6
4,888,040 + +0.0
4,888,041 - -0.7
4,888,116 + +0.2
4,888,178 + PfGW456L13_4377 0.12 +1.2
4,888,252 + PfGW456L13_4377 0.25 -0.5
4,888,253 - PfGW456L13_4377 0.25 -0.0
4,888,253 - PfGW456L13_4377 0.25 +1.8
4,888,270 + PfGW456L13_4377 0.28 -0.7
4,888,271 - PfGW456L13_4377 0.28 -0.4
4,888,271 - PfGW456L13_4377 0.28 +2.0
4,888,271 - PfGW456L13_4377 0.28 -0.3
4,888,874 + PfGW456L13_4378 0.19 +1.1
4,889,229 + PfGW456L13_4378 0.52 +1.8
4,889,229 + PfGW456L13_4378 0.52 +0.2
4,889,230 - PfGW456L13_4378 0.52 -3.3
4,889,271 + PfGW456L13_4378 0.55 +0.7
4,889,272 - PfGW456L13_4378 0.56 +0.0
4,889,334 + PfGW456L13_4378 0.61 +0.8
4,889,334 + PfGW456L13_4378 0.61 +0.3
4,889,335 - PfGW456L13_4378 0.61 -1.5
4,889,335 - PfGW456L13_4378 0.61 +0.1
4,889,335 - PfGW456L13_4378 0.61 +1.1
4,889,430 + PfGW456L13_4378 0.70 +1.2
4,889,430 + PfGW456L13_4378 0.70 +0.1
4,889,430 + PfGW456L13_4378 0.70 -0.5
4,889,430 + PfGW456L13_4378 0.70 +0.5
4,889,431 - PfGW456L13_4378 0.70 -0.4
4,889,431 - PfGW456L13_4378 0.70 +1.2
4,889,431 - PfGW456L13_4378 0.70 +0.5
4,889,431 - PfGW456L13_4378 0.70 -1.5
4,890,043 + PfGW456L13_4379 0.40 +0.4
4,890,128 + PfGW456L13_4379 0.51 +0.1
4,890,128 + PfGW456L13_4379 0.51 +0.5
4,890,132 + PfGW456L13_4379 0.51 -0.9
4,890,133 - PfGW456L13_4379 0.52 +1.2
4,890,242 + PfGW456L13_4379 0.66 -0.4
4,890,242 + PfGW456L13_4379 0.66 +1.2
4,890,243 - PfGW456L13_4379 0.66 +1.8
4,890,243 - PfGW456L13_4379 0.66 +1.6
4,890,243 - PfGW456L13_4379 0.66 -1.6
4,890,308 + PfGW456L13_4379 0.74 -0.0
4,890,308 + PfGW456L13_4379 0.74 -0.8
4,890,308 + PfGW456L13_4379 0.74 -0.0
4,890,308 + PfGW456L13_4379 0.74 +0.4
4,890,308 + PfGW456L13_4379 0.74 +1.4
4,890,308 + PfGW456L13_4379 0.74 -0.0
4,890,309 - PfGW456L13_4379 0.74 +0.5
4,890,309 - PfGW456L13_4379 0.74 -0.8
4,890,309 - PfGW456L13_4379 0.74 +0.8
4,890,309 - PfGW456L13_4379 0.74 -1.2
4,890,309 - PfGW456L13_4379 0.74 -0.4
4,890,335 + PfGW456L13_4379 0.78 +0.3
4,890,336 - PfGW456L13_4379 0.78 +0.7
4,890,336 - PfGW456L13_4379 0.78 -0.5
4,890,344 + PfGW456L13_4379 0.79 -0.5
4,890,344 + PfGW456L13_4379 0.79 +0.9
4,890,386 + PfGW456L13_4379 0.84 -0.0
4,890,387 - PfGW456L13_4379 0.84 -0.3
4,890,387 - PfGW456L13_4379 0.84 -0.2
4,890,496 - -0.2
4,890,547 + -1.4
4,890,547 + +0.5
4,890,548 - +0.2
4,890,548 - -0.1
4,890,548 - -1.4
4,890,634 + +0.1
4,890,634 + +0.3
4,890,634 + +0.5
4,890,635 - +0.1
4,890,636 + +0.6
4,890,637 - +0.4

Or see this region's nucleotide sequence