Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2956

Experiment: Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2955 and PfGW456L13_2956 are separated by 293 nucleotidesPfGW456L13_2956 and PfGW456L13_2957 are separated by 4 nucleotides PfGW456L13_2955 - RND efflux system, membrane fusion protein CmeA, at 3,298,195 to 3,299,352 _2955 PfGW456L13_2956 - Transcriptional regulatory protein RstA, at 3,299,646 to 3,300,347 _2956 PfGW456L13_2957 - Sensory histidine kinase QseC, at 3,300,352 to 3,301,653 _2957 Position (kb) 3299 3300 3301Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3298.848 kb on - strand, within PfGW456L13_2955at 3298.938 kb on - strand, within PfGW456L13_2955at 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.354 kb on + strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.355 kb on - strandat 3299.357 kb on + strandat 3299.366 kb on - strandat 3299.366 kb on - strandat 3299.366 kb on - strandat 3299.383 kb on + strandat 3299.384 kb on - strandat 3299.440 kb on - strandat 3299.449 kb on - strandat 3299.470 kb on + strandat 3299.470 kb on + strandat 3299.470 kb on + strandat 3299.470 kb on + strandat 3299.470 kb on + strandat 3299.470 kb on + strandat 3299.470 kb on + strandat 3299.471 kb on - strandat 3299.471 kb on - strandat 3299.471 kb on - strandat 3299.471 kb on - strandat 3299.471 kb on - strandat 3299.471 kb on - strandat 3299.471 kb on - strandat 3299.471 kb on - strandat 3299.471 kb on - strandat 3299.471 kb on - strandat 3299.471 kb on - strandat 3299.472 kb on + strandat 3299.473 kb on - strandat 3299.493 kb on + strandat 3299.505 kb on + strandat 3299.505 kb on + strandat 3299.612 kb on + strandat 3299.612 kb on + strandat 3299.612 kb on + strandat 3299.721 kb on + strand, within PfGW456L13_2956at 3299.722 kb on - strand, within PfGW456L13_2956at 3299.940 kb on + strandat 3299.941 kb on - strand, within PfGW456L13_2956at 3299.941 kb on - strand, within PfGW456L13_2956at 3299.941 kb on - strand, within PfGW456L13_2956at 3300.123 kb on + strand, within PfGW456L13_2956at 3300.124 kb on - strand, within PfGW456L13_2956at 3300.124 kb on - strand, within PfGW456L13_2956at 3300.166 kb on + strand, within PfGW456L13_2956at 3300.166 kb on + strand, within PfGW456L13_2956at 3300.166 kb on + strand, within PfGW456L13_2956at 3300.166 kb on + strand, within PfGW456L13_2956at 3300.166 kb on + strand, within PfGW456L13_2956at 3300.166 kb on + strand, within PfGW456L13_2956at 3300.167 kb on - strand, within PfGW456L13_2956at 3300.167 kb on - strand, within PfGW456L13_2956at 3300.167 kb on - strand, within PfGW456L13_2956at 3300.167 kb on - strand, within PfGW456L13_2956at 3300.315 kb on + strandat 3300.315 kb on + strandat 3300.315 kb on + strandat 3300.315 kb on + strandat 3300.376 kb on + strandat 3300.376 kb on + strandat 3300.377 kb on - strandat 3300.377 kb on - strandat 3300.377 kb on - strandat 3300.412 kb on + strandat 3300.412 kb on + strandat 3300.412 kb on + strandat 3300.412 kb on + strandat 3300.412 kb on + strandat 3300.413 kb on - strandat 3300.413 kb on - strandat 3300.463 kb on + strandat 3300.463 kb on + strandat 3300.463 kb on + strandat 3300.463 kb on + strandat 3300.463 kb on + strandat 3300.464 kb on - strandat 3300.464 kb on - strandat 3300.464 kb on - strandat 3300.766 kb on + strand, within PfGW456L13_2957at 3300.767 kb on - strand, within PfGW456L13_2957at 3301.163 kb on - strand, within PfGW456L13_2957

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 1 mg/ml
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3,298,848 - PfGW456L13_2955 0.56 +1.0
3,298,938 - PfGW456L13_2955 0.64 +1.2
3,299,354 + -1.1
3,299,354 + -1.3
3,299,354 + +0.3
3,299,354 + +0.3
3,299,354 + +0.0
3,299,354 + -1.6
3,299,354 + -0.7
3,299,354 + +0.4
3,299,354 + +0.7
3,299,354 + +0.6
3,299,354 + -1.9
3,299,354 + -1.7
3,299,354 + +0.1
3,299,354 + +0.1
3,299,354 + +0.7
3,299,354 + -1.2
3,299,354 + -0.1
3,299,354 + -1.0
3,299,354 + +1.3
3,299,354 + +1.1
3,299,354 + +0.2
3,299,354 + +0.4
3,299,354 + +0.7
3,299,354 + -0.1
3,299,354 + +0.2
3,299,354 + +0.3
3,299,354 + -0.3
3,299,354 + +0.1
3,299,354 + +0.3
3,299,355 - +0.0
3,299,355 - +0.1
3,299,355 - +0.4
3,299,355 - +1.1
3,299,355 - +0.0
3,299,355 - +0.5
3,299,355 - +0.6
3,299,355 - +0.1
3,299,355 - -0.8
3,299,355 - -0.3
3,299,355 - -0.7
3,299,355 - +0.2
3,299,355 - -2.3
3,299,355 - +0.5
3,299,355 - +0.5
3,299,355 - -1.3
3,299,355 - -0.3
3,299,355 - +1.7
3,299,355 - +0.5
3,299,355 - -0.2
3,299,355 - -0.0
3,299,355 - -0.5
3,299,355 - +0.3
3,299,355 - -0.8
3,299,355 - -0.3
3,299,355 - +1.9
3,299,355 - +0.1
3,299,355 - +1.3
3,299,355 - -0.3
3,299,355 - +0.2
3,299,355 - -0.1
3,299,355 - +1.3
3,299,357 + -1.2
3,299,366 - +0.9
3,299,366 - +0.7
3,299,366 - -0.2
3,299,383 + +0.3
3,299,384 - -0.3
3,299,440 - -0.3
3,299,449 - +1.0
3,299,470 + -0.9
3,299,470 + -1.6
3,299,470 + -1.3
3,299,470 + -0.0
3,299,470 + -0.7
3,299,470 + +0.3
3,299,470 + +3.0
3,299,471 - -1.7
3,299,471 - -0.7
3,299,471 - -0.8
3,299,471 - -0.6
3,299,471 - +0.8
3,299,471 - -1.2
3,299,471 - -0.1
3,299,471 - -0.9
3,299,471 - -1.1
3,299,471 - -0.5
3,299,471 - +2.0
3,299,472 + +0.3
3,299,473 - +0.2
3,299,493 + -0.6
3,299,505 + -1.1
3,299,505 + -0.6
3,299,612 + +0.3
3,299,612 + +0.9
3,299,612 + +0.6
3,299,721 + PfGW456L13_2956 0.11 -2.5
3,299,722 - PfGW456L13_2956 0.11 -3.2
3,299,940 + -0.9
3,299,941 - PfGW456L13_2956 0.42 -3.0
3,299,941 - PfGW456L13_2956 0.42 -1.7
3,299,941 - PfGW456L13_2956 0.42 -2.3
3,300,123 + PfGW456L13_2956 0.68 -0.7
3,300,124 - PfGW456L13_2956 0.68 -0.2
3,300,124 - PfGW456L13_2956 0.68 -1.1
3,300,166 + PfGW456L13_2956 0.74 -1.4
3,300,166 + PfGW456L13_2956 0.74 -0.9
3,300,166 + PfGW456L13_2956 0.74 -2.5
3,300,166 + PfGW456L13_2956 0.74 -1.3
3,300,166 + PfGW456L13_2956 0.74 -1.9
3,300,166 + PfGW456L13_2956 0.74 -3.1
3,300,167 - PfGW456L13_2956 0.74 -2.7
3,300,167 - PfGW456L13_2956 0.74 -1.7
3,300,167 - PfGW456L13_2956 0.74 -2.8
3,300,167 - PfGW456L13_2956 0.74 -0.9
3,300,315 + -2.2
3,300,315 + -2.0
3,300,315 + -2.0
3,300,315 + -2.1
3,300,376 + -0.8
3,300,376 + -2.2
3,300,377 - -1.8
3,300,377 - -1.7
3,300,377 - -0.9
3,300,412 + -0.5
3,300,412 + -2.5
3,300,412 + -3.1
3,300,412 + -2.7
3,300,412 + -3.5
3,300,413 - +1.7
3,300,413 - +0.3
3,300,463 + -1.8
3,300,463 + -1.5
3,300,463 + +0.5
3,300,463 + -1.3
3,300,463 + -2.1
3,300,464 - -1.4
3,300,464 - +0.1
3,300,464 - -0.1
3,300,766 + PfGW456L13_2957 0.32 +0.9
3,300,767 - PfGW456L13_2957 0.32 -2.5
3,301,163 - PfGW456L13_2957 0.62 -2.6

Or see this region's nucleotide sequence