Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2640

Experiment: Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2639 and PfGW456L13_2640 are separated by 59 nucleotidesPfGW456L13_2640 and PfGW456L13_2641 are separated by 215 nucleotides PfGW456L13_2639 - tRNA-specific 2-thiouridylase MnmA, at 2,939,591 to 2,940,724 _2639 PfGW456L13_2640 - Nudix-like NDP and NTP phosphohydrolase YmfB, at 2,940,784 to 2,941,230 _2640 PfGW456L13_2641 - Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42), at 2,941,446 to 2,943,671 _2641 Position (kb) 2940 2941 2942Strain fitness (log2 ratio) -1 0 1 2at 2940.725 kb on - strandat 2940.833 kb on + strand, within PfGW456L13_2640at 2940.833 kb on + strand, within PfGW456L13_2640at 2940.834 kb on - strand, within PfGW456L13_2640at 2940.989 kb on + strand, within PfGW456L13_2640at 2941.022 kb on + strand, within PfGW456L13_2640at 2941.022 kb on + strand, within PfGW456L13_2640at 2941.022 kb on + strand, within PfGW456L13_2640at 2941.022 kb on + strand, within PfGW456L13_2640at 2941.022 kb on + strand, within PfGW456L13_2640at 2941.023 kb on - strandat 2941.023 kb on - strand, within PfGW456L13_2640at 2941.033 kb on + strand, within PfGW456L13_2640at 2941.230 kb on + strandat 2941.262 kb on + strandat 2941.263 kb on - strandat 2941.263 kb on - strandat 2941.269 kb on - strandat 2941.325 kb on + strandat 2941.325 kb on + strandat 2941.325 kb on + strandat 2941.325 kb on + strandat 2941.326 kb on - strandat 2941.326 kb on - strandat 2941.326 kb on - strandat 2941.326 kb on - strandat 2941.326 kb on - strandat 2941.327 kb on + strandat 2941.327 kb on + strandat 2941.327 kb on + strandat 2941.328 kb on - strandat 2941.328 kb on - strandat 2941.328 kb on - strandat 2941.328 kb on - strandat 2941.328 kb on - strandat 2941.328 kb on - strandat 2941.328 kb on - strandat 2941.328 kb on - strandat 2941.328 kb on - strandat 2941.328 kb on - strandat 2941.328 kb on - strandat 2941.328 kb on - strandat 2941.328 kb on - strandat 2941.334 kb on - strandat 2941.440 kb on - strandat 2941.440 kb on - strandat 2941.447 kb on + strandat 2941.448 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 1 mg/ml
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2,940,725 - -1.3
2,940,833 + PfGW456L13_2640 0.11 +0.2
2,940,833 + PfGW456L13_2640 0.11 +0.6
2,940,834 - PfGW456L13_2640 0.11 -0.5
2,940,989 + PfGW456L13_2640 0.46 +0.9
2,941,022 + PfGW456L13_2640 0.53 -0.8
2,941,022 + PfGW456L13_2640 0.53 +1.0
2,941,022 + PfGW456L13_2640 0.53 -0.6
2,941,022 + PfGW456L13_2640 0.53 +0.4
2,941,022 + PfGW456L13_2640 0.53 +0.5
2,941,023 - +2.7
2,941,023 - PfGW456L13_2640 0.53 +1.7
2,941,033 + PfGW456L13_2640 0.56 -0.3
2,941,230 + +0.1
2,941,262 + +0.2
2,941,263 - -0.7
2,941,263 - -0.3
2,941,269 - +0.7
2,941,325 + +1.1
2,941,325 + -1.3
2,941,325 + -0.0
2,941,325 + +0.2
2,941,326 - -0.8
2,941,326 - -0.2
2,941,326 - +0.2
2,941,326 - -1.3
2,941,326 - -0.3
2,941,327 + +0.1
2,941,327 + -0.3
2,941,327 + +1.2
2,941,328 - -0.6
2,941,328 - +0.4
2,941,328 - +1.5
2,941,328 - -1.3
2,941,328 - -0.8
2,941,328 - -1.0
2,941,328 - -0.1
2,941,328 - +1.4
2,941,328 - -0.3
2,941,328 - -1.4
2,941,328 - +0.7
2,941,328 - +0.6
2,941,328 - +0.3
2,941,334 - -0.7
2,941,440 - +0.6
2,941,440 - +0.1
2,941,447 + -0.3
2,941,448 - +0.2

Or see this region's nucleotide sequence