Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_201

Experiment: Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_200 and PfGW456L13_201 overlap by 4 nucleotidesPfGW456L13_201 and PfGW456L13_202 overlap by 31 nucleotidesPfGW456L13_202 and PfGW456L13_203 overlap by 1 nucleotides PfGW456L13_200 - Glycosyl transferase in large core OS assembly cluster, at 228,991 to 230,145 _200 PfGW456L13_201 - Hypothetical protein FIG015671 in large core OS assembly cluster, at 230,142 to 231,623 _201 PfGW456L13_202 - Probable transcription regulator Mig-14, at 231,593 to 232,489 _202 PfGW456L13_203 - Glycosyl transferase in large core OS assembly cluster, at 232,489 to 233,619 _203 Position (kb) 230 231 232Strain fitness (log2 ratio) -2 -1 0 1 2 3at 229.334 kb on + strand, within PfGW456L13_200at 229.334 kb on + strand, within PfGW456L13_200at 229.334 kb on + strand, within PfGW456L13_200at 229.334 kb on + strand, within PfGW456L13_200at 229.335 kb on - strand, within PfGW456L13_200at 229.461 kb on - strand, within PfGW456L13_200at 229.461 kb on - strand, within PfGW456L13_200at 229.496 kb on + strand, within PfGW456L13_200at 229.496 kb on + strand, within PfGW456L13_200at 229.496 kb on + strand, within PfGW456L13_200at 229.496 kb on + strand, within PfGW456L13_200at 229.496 kb on + strand, within PfGW456L13_200at 229.496 kb on + strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.497 kb on - strand, within PfGW456L13_200at 229.500 kb on + strand, within PfGW456L13_200at 229.500 kb on + strand, within PfGW456L13_200at 229.501 kb on - strand, within PfGW456L13_200at 229.501 kb on - strand, within PfGW456L13_200at 229.640 kb on + strand, within PfGW456L13_200at 229.640 kb on + strand, within PfGW456L13_200at 229.640 kb on + strand, within PfGW456L13_200at 229.640 kb on + strand, within PfGW456L13_200at 229.640 kb on + strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.641 kb on - strand, within PfGW456L13_200at 229.644 kb on + strand, within PfGW456L13_200at 229.644 kb on + strand, within PfGW456L13_200at 229.644 kb on + strand, within PfGW456L13_200at 229.645 kb on - strand, within PfGW456L13_200at 229.645 kb on - strand, within PfGW456L13_200at 229.645 kb on - strand, within PfGW456L13_200at 229.645 kb on - strand, within PfGW456L13_200at 229.645 kb on - strand, within PfGW456L13_200at 229.645 kb on - strand, within PfGW456L13_200at 229.682 kb on + strand, within PfGW456L13_200at 229.682 kb on + strand, within PfGW456L13_200at 229.682 kb on + strand, within PfGW456L13_200at 229.682 kb on + strand, within PfGW456L13_200at 229.683 kb on - strand, within PfGW456L13_200at 229.683 kb on - strand, within PfGW456L13_200at 229.683 kb on - strand, within PfGW456L13_200at 229.683 kb on - strand, within PfGW456L13_200at 229.683 kb on - strand, within PfGW456L13_200at 229.757 kb on + strand, within PfGW456L13_200at 229.769 kb on + strand, within PfGW456L13_200at 229.870 kb on + strand, within PfGW456L13_200at 229.870 kb on + strand, within PfGW456L13_200at 229.870 kb on + strand, within PfGW456L13_200at 229.870 kb on + strand, within PfGW456L13_200at 229.870 kb on + strand, within PfGW456L13_200at 229.870 kb on + strand, within PfGW456L13_200at 229.870 kb on + strand, within PfGW456L13_200at 229.871 kb on - strand, within PfGW456L13_200at 229.871 kb on - strand, within PfGW456L13_200at 229.871 kb on - strand, within PfGW456L13_200at 229.901 kb on + strand, within PfGW456L13_200at 229.901 kb on + strand, within PfGW456L13_200at 229.901 kb on + strand, within PfGW456L13_200at 229.902 kb on - strand, within PfGW456L13_200at 229.902 kb on - strand, within PfGW456L13_200at 229.902 kb on - strand, within PfGW456L13_200at 229.902 kb on - strand, within PfGW456L13_200at 229.902 kb on - strand, within PfGW456L13_200at 229.902 kb on - strand, within PfGW456L13_200at 229.962 kb on - strand, within PfGW456L13_200at 230.106 kb on - strandat 230.106 kb on - strandat 230.106 kb on - strandat 230.106 kb on - strandat 230.145 kb on + strandat 230.146 kb on - strandat 230.146 kb on - strandat 230.146 kb on - strandat 230.146 kb on - strandat 230.146 kb on - strandat 230.242 kb on + strandat 230.242 kb on + strandat 230.277 kb on + strandat 230.278 kb on - strandat 230.278 kb on - strandat 230.278 kb on - strandat 230.278 kb on - strandat 230.278 kb on - strandat 230.278 kb on - strandat 230.387 kb on - strand, within PfGW456L13_201at 230.808 kb on + strand, within PfGW456L13_201at 230.809 kb on - strand, within PfGW456L13_201at 230.827 kb on - strand, within PfGW456L13_201at 230.983 kb on + strand, within PfGW456L13_201at 230.993 kb on - strand, within PfGW456L13_201at 231.166 kb on + strand, within PfGW456L13_201at 231.245 kb on + strand, within PfGW456L13_201at 231.246 kb on - strand, within PfGW456L13_201at 231.386 kb on - strand, within PfGW456L13_201at 231.409 kb on + strand, within PfGW456L13_201at 231.409 kb on + strand, within PfGW456L13_201at 231.542 kb on + strandat 231.597 kb on - strandat 231.636 kb on + strandat 231.636 kb on + strandat 231.728 kb on + strand, within PfGW456L13_202at 231.780 kb on + strand, within PfGW456L13_202at 231.816 kb on + strand, within PfGW456L13_202at 231.957 kb on + strand, within PfGW456L13_202at 231.957 kb on + strand, within PfGW456L13_202at 231.957 kb on + strand, within PfGW456L13_202at 231.957 kb on + strand, within PfGW456L13_202at 231.957 kb on + strand, within PfGW456L13_202at 231.957 kb on + strand, within PfGW456L13_202at 232.152 kb on + strand, within PfGW456L13_202at 232.152 kb on + strand, within PfGW456L13_202at 232.152 kb on + strand, within PfGW456L13_202at 232.428 kb on + strandat 232.428 kb on + strandat 232.432 kb on + strandat 232.432 kb on + strandat 232.432 kb on + strandat 232.432 kb on + strandat 232.620 kb on + strand, within PfGW456L13_203

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 1 mg/ml
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229,334 + PfGW456L13_200 0.30 +0.6
229,334 + PfGW456L13_200 0.30 +1.6
229,334 + PfGW456L13_200 0.30 +0.5
229,334 + PfGW456L13_200 0.30 +1.4
229,335 - PfGW456L13_200 0.30 +0.5
229,461 - PfGW456L13_200 0.41 +1.0
229,461 - PfGW456L13_200 0.41 +0.7
229,496 + PfGW456L13_200 0.44 +0.7
229,496 + PfGW456L13_200 0.44 +1.9
229,496 + PfGW456L13_200 0.44 +0.1
229,496 + PfGW456L13_200 0.44 +1.0
229,496 + PfGW456L13_200 0.44 +0.5
229,496 + PfGW456L13_200 0.44 -0.4
229,497 - PfGW456L13_200 0.44 +0.2
229,497 - PfGW456L13_200 0.44 +1.1
229,497 - PfGW456L13_200 0.44 -0.1
229,497 - PfGW456L13_200 0.44 +0.5
229,497 - PfGW456L13_200 0.44 +0.8
229,497 - PfGW456L13_200 0.44 +1.6
229,497 - PfGW456L13_200 0.44 +0.6
229,497 - PfGW456L13_200 0.44 -0.3
229,497 - PfGW456L13_200 0.44 +0.4
229,497 - PfGW456L13_200 0.44 +1.3
229,497 - PfGW456L13_200 0.44 +1.3
229,497 - PfGW456L13_200 0.44 -2.0
229,500 + PfGW456L13_200 0.44 +0.6
229,500 + PfGW456L13_200 0.44 +1.2
229,501 - PfGW456L13_200 0.44 +0.8
229,501 - PfGW456L13_200 0.44 +2.9
229,640 + PfGW456L13_200 0.56 +0.7
229,640 + PfGW456L13_200 0.56 +0.5
229,640 + PfGW456L13_200 0.56 +0.9
229,640 + PfGW456L13_200 0.56 +1.4
229,640 + PfGW456L13_200 0.56 +0.4
229,641 - PfGW456L13_200 0.56 -1.5
229,641 - PfGW456L13_200 0.56 +1.6
229,641 - PfGW456L13_200 0.56 +0.7
229,641 - PfGW456L13_200 0.56 +0.1
229,641 - PfGW456L13_200 0.56 +0.6
229,641 - PfGW456L13_200 0.56 +1.5
229,641 - PfGW456L13_200 0.56 +0.5
229,641 - PfGW456L13_200 0.56 +1.6
229,641 - PfGW456L13_200 0.56 +0.1
229,644 + PfGW456L13_200 0.57 +0.8
229,644 + PfGW456L13_200 0.57 -2.5
229,644 + PfGW456L13_200 0.57 +0.4
229,645 - PfGW456L13_200 0.57 +0.7
229,645 - PfGW456L13_200 0.57 -0.1
229,645 - PfGW456L13_200 0.57 +1.0
229,645 - PfGW456L13_200 0.57 +2.2
229,645 - PfGW456L13_200 0.57 +0.6
229,645 - PfGW456L13_200 0.57 +1.0
229,682 + PfGW456L13_200 0.60 +0.5
229,682 + PfGW456L13_200 0.60 +1.0
229,682 + PfGW456L13_200 0.60 -0.1
229,682 + PfGW456L13_200 0.60 +0.8
229,683 - PfGW456L13_200 0.60 +0.2
229,683 - PfGW456L13_200 0.60 -0.1
229,683 - PfGW456L13_200 0.60 +1.3
229,683 - PfGW456L13_200 0.60 +1.1
229,683 - PfGW456L13_200 0.60 -0.4
229,757 + PfGW456L13_200 0.66 -0.0
229,769 + PfGW456L13_200 0.67 +0.2
229,870 + PfGW456L13_200 0.76 -0.8
229,870 + PfGW456L13_200 0.76 -0.9
229,870 + PfGW456L13_200 0.76 +1.5
229,870 + PfGW456L13_200 0.76 +1.0
229,870 + PfGW456L13_200 0.76 +0.9
229,870 + PfGW456L13_200 0.76 +1.6
229,870 + PfGW456L13_200 0.76 +1.3
229,871 - PfGW456L13_200 0.76 +0.7
229,871 - PfGW456L13_200 0.76 +0.5
229,871 - PfGW456L13_200 0.76 -0.2
229,901 + PfGW456L13_200 0.79 +1.0
229,901 + PfGW456L13_200 0.79 +1.0
229,901 + PfGW456L13_200 0.79 +0.6
229,902 - PfGW456L13_200 0.79 +1.1
229,902 - PfGW456L13_200 0.79 +1.9
229,902 - PfGW456L13_200 0.79 +0.5
229,902 - PfGW456L13_200 0.79 +0.2
229,902 - PfGW456L13_200 0.79 +0.5
229,902 - PfGW456L13_200 0.79 +0.7
229,962 - PfGW456L13_200 0.84 +0.5
230,106 - +0.2
230,106 - +0.4
230,106 - +0.2
230,106 - +0.7
230,145 + -0.5
230,146 - +0.0
230,146 - +0.3
230,146 - -1.0
230,146 - -0.5
230,146 - +0.9
230,242 + -0.0
230,242 + -0.1
230,277 + +1.7
230,278 - +1.9
230,278 - +1.8
230,278 - +1.6
230,278 - +2.4
230,278 - +2.3
230,278 - +0.6
230,387 - PfGW456L13_201 0.17 +2.4
230,808 + PfGW456L13_201 0.45 +0.9
230,809 - PfGW456L13_201 0.45 +0.2
230,827 - PfGW456L13_201 0.46 +2.3
230,983 + PfGW456L13_201 0.57 +2.2
230,993 - PfGW456L13_201 0.57 +0.2
231,166 + PfGW456L13_201 0.69 +0.4
231,245 + PfGW456L13_201 0.74 +1.1
231,246 - PfGW456L13_201 0.74 +0.2
231,386 - PfGW456L13_201 0.84 +1.3
231,409 + PfGW456L13_201 0.85 +1.9
231,409 + PfGW456L13_201 0.85 +1.0
231,542 + -0.7
231,597 - -0.8
231,636 + +1.8
231,636 + +0.7
231,728 + PfGW456L13_202 0.15 +0.4
231,780 + PfGW456L13_202 0.21 +1.9
231,816 + PfGW456L13_202 0.25 +1.4
231,957 + PfGW456L13_202 0.41 +2.6
231,957 + PfGW456L13_202 0.41 +0.7
231,957 + PfGW456L13_202 0.41 +1.8
231,957 + PfGW456L13_202 0.41 +1.5
231,957 + PfGW456L13_202 0.41 +1.3
231,957 + PfGW456L13_202 0.41 +2.3
232,152 + PfGW456L13_202 0.62 +0.9
232,152 + PfGW456L13_202 0.62 +1.6
232,152 + PfGW456L13_202 0.62 +1.2
232,428 + +1.4
232,428 + +1.0
232,432 + +0.8
232,432 + -1.8
232,432 + +1.4
232,432 + +1.7
232,620 + PfGW456L13_203 0.12 +1.0

Or see this region's nucleotide sequence