Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1855

Experiment: Bacitracin 1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1853 and PfGW456L13_1854 are separated by 304 nucleotidesPfGW456L13_1854 and PfGW456L13_1855 overlap by 11 nucleotidesPfGW456L13_1855 and PfGW456L13_1856 are separated by 14 nucleotidesPfGW456L13_1856 and PfGW456L13_1857 overlap by 1 nucleotides PfGW456L13_1853 - Holliday junction DNA helicase RuvB, at 2,040,198 to 2,041,259 _1853 PfGW456L13_1854 - 4-hydroxybenzoyl-CoA thioesterase family active site, at 2,041,564 to 2,041,854 _1854 PfGW456L13_1855 - MotA/TolQ/ExbB proton channel family protein, at 2,041,844 to 2,042,539 _1855 PfGW456L13_1856 - Tol biopolymer transport system, TolR protein, at 2,042,554 to 2,043,015 _1856 PfGW456L13_1857 - TolA protein, at 2,043,015 to 2,044,094 _1857 Position (kb) 2041 2042 2043Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2040.927 kb on - strand, within PfGW456L13_1853at 2041.114 kb on - strand, within PfGW456L13_1853at 2041.131 kb on + strand, within PfGW456L13_1853at 2041.131 kb on + strand, within PfGW456L13_1853at 2041.132 kb on - strand, within PfGW456L13_1853at 2041.132 kb on - strand, within PfGW456L13_1853at 2041.176 kb on + strandat 2041.177 kb on - strandat 2041.192 kb on + strandat 2041.228 kb on + strandat 2041.229 kb on - strandat 2041.229 kb on - strandat 2041.229 kb on - strandat 2041.258 kb on - strandat 2041.258 kb on - strandat 2041.258 kb on - strandat 2041.261 kb on + strandat 2041.262 kb on - strandat 2041.292 kb on + strandat 2041.292 kb on + strandat 2041.292 kb on + strandat 2041.292 kb on + strandat 2041.293 kb on - strandat 2041.293 kb on - strandat 2041.293 kb on - strandat 2041.293 kb on - strandat 2041.293 kb on - strandat 2041.293 kb on - strandat 2041.293 kb on - strandat 2041.308 kb on + strandat 2041.308 kb on + strandat 2041.309 kb on - strandat 2041.309 kb on - strandat 2041.309 kb on - strandat 2041.374 kb on + strandat 2041.374 kb on + strandat 2041.374 kb on + strandat 2041.381 kb on + strandat 2041.381 kb on + strandat 2041.381 kb on + strandat 2041.381 kb on + strandat 2041.381 kb on + strandat 2041.386 kb on + strandat 2041.435 kb on + strandat 2041.438 kb on + strandat 2041.438 kb on + strandat 2041.468 kb on + strandat 2041.468 kb on + strandat 2041.468 kb on + strandat 2041.471 kb on + strandat 2041.471 kb on + strandat 2041.471 kb on + strandat 2041.471 kb on + strandat 2041.471 kb on + strandat 2041.476 kb on + strandat 2041.476 kb on + strandat 2041.476 kb on + strandat 2041.480 kb on + strandat 2041.480 kb on + strandat 2041.491 kb on + strandat 2041.631 kb on + strand, within PfGW456L13_1854at 2041.643 kb on + strand, within PfGW456L13_1854at 2041.784 kb on + strand, within PfGW456L13_1854at 2041.818 kb on + strand, within PfGW456L13_1854at 2041.818 kb on + strand, within PfGW456L13_1854at 2042.537 kb on + strandat 2042.537 kb on + strandat 2042.537 kb on + strandat 2042.537 kb on + strandat 2043.051 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 1 mg/ml
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2,040,927 - PfGW456L13_1853 0.69 -1.7
2,041,114 - PfGW456L13_1853 0.86 -0.3
2,041,131 + PfGW456L13_1853 0.88 -1.4
2,041,131 + PfGW456L13_1853 0.88 -2.5
2,041,132 - PfGW456L13_1853 0.88 -0.9
2,041,132 - PfGW456L13_1853 0.88 -2.6
2,041,176 + -1.4
2,041,177 - -1.4
2,041,192 + -1.1
2,041,228 + -0.1
2,041,229 - -3.1
2,041,229 - +0.9
2,041,229 - -2.3
2,041,258 - -2.1
2,041,258 - -2.6
2,041,258 - -2.3
2,041,261 + -1.2
2,041,262 - -0.4
2,041,292 + +0.4
2,041,292 + -1.1
2,041,292 + -0.4
2,041,292 + +0.3
2,041,293 - -0.8
2,041,293 - -1.9
2,041,293 - -1.2
2,041,293 - -3.1
2,041,293 - -3.5
2,041,293 - -0.9
2,041,293 - -3.0
2,041,308 + -0.4
2,041,308 + +0.9
2,041,309 - -1.6
2,041,309 - -2.1
2,041,309 - -1.7
2,041,374 + -0.8
2,041,374 + -0.9
2,041,374 + +0.4
2,041,381 + -0.4
2,041,381 + -0.5
2,041,381 + +0.3
2,041,381 + -0.9
2,041,381 + -0.4
2,041,386 + -1.0
2,041,435 + -0.7
2,041,438 + -1.7
2,041,438 + -0.4
2,041,468 + +0.4
2,041,468 + +1.4
2,041,468 + +0.0
2,041,471 + +0.2
2,041,471 + +0.6
2,041,471 + +0.8
2,041,471 + -0.9
2,041,471 + +0.1
2,041,476 + +2.6
2,041,476 + +0.3
2,041,476 + -0.1
2,041,480 + -0.2
2,041,480 + -0.1
2,041,491 + -0.3
2,041,631 + PfGW456L13_1854 0.23 +0.1
2,041,643 + PfGW456L13_1854 0.27 -0.1
2,041,784 + PfGW456L13_1854 0.76 -0.9
2,041,818 + PfGW456L13_1854 0.87 +1.7
2,041,818 + PfGW456L13_1854 0.87 -0.6
2,042,537 + +1.6
2,042,537 + -0.9
2,042,537 + +0.5
2,042,537 + -0.3
2,043,051 + -1.0

Or see this region's nucleotide sequence