Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_3751 and Echvi_3752 are separated by 20 nucleotides Echvi_3752 and Echvi_3753 are separated by 90 nucleotides Echvi_3753 and Echvi_3754 are separated by 292 nucleotides
Echvi_3751: Echvi_3751 - SusD family., at 4,470,543 to 4,472,207
_3751
Echvi_3752: Echvi_3752 - TonB-linked outer membrane protein, SusC/RagA family, at 4,472,228 to 4,475,386
_3752
Echvi_3753: Echvi_3753 - hypothetical protein, at 4,475,477 to 4,475,653
_3753
Echvi_3754: Echvi_3754 - Signal transduction histidine kinase, at 4,475,946 to 4,480,106
_3754
Position (kb)
4472
4473
4474
4475
4476 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 4471.266 kb on - strand, within Echvi_3751 at 4471.353 kb on + strand, within Echvi_3751 at 4471.353 kb on + strand, within Echvi_3751 at 4471.354 kb on - strand, within Echvi_3751 at 4471.369 kb on + strand, within Echvi_3751 at 4471.370 kb on - strand, within Echvi_3751 at 4471.407 kb on - strand, within Echvi_3751 at 4471.486 kb on + strand, within Echvi_3751 at 4471.631 kb on - strand, within Echvi_3751 at 4471.649 kb on + strand, within Echvi_3751 at 4471.709 kb on + strand, within Echvi_3751 at 4471.709 kb on + strand, within Echvi_3751 at 4471.710 kb on - strand, within Echvi_3751 at 4471.775 kb on + strand, within Echvi_3751 at 4471.859 kb on + strand, within Echvi_3751 at 4471.860 kb on - strand, within Echvi_3751 at 4471.929 kb on - strand, within Echvi_3751 at 4472.009 kb on + strand, within Echvi_3751 at 4472.009 kb on + strand, within Echvi_3751 at 4472.009 kb on + strand, within Echvi_3751 at 4472.016 kb on - strand, within Echvi_3751 at 4472.028 kb on + strand, within Echvi_3751 at 4472.028 kb on + strand, within Echvi_3751 at 4472.029 kb on - strand, within Echvi_3751 at 4472.033 kb on + strand, within Echvi_3751 at 4472.033 kb on + strand, within Echvi_3751 at 4472.033 kb on + strand, within Echvi_3751 at 4472.034 kb on - strand, within Echvi_3751 at 4472.038 kb on + strand, within Echvi_3751 at 4472.039 kb on - strand, within Echvi_3751 at 4472.040 kb on + strand, within Echvi_3751 at 4472.061 kb on + strand at 4472.320 kb on + strand at 4472.331 kb on + strand at 4472.332 kb on - strand at 4472.352 kb on + strand at 4472.352 kb on + strand at 4472.361 kb on + strand at 4472.454 kb on + strand at 4472.454 kb on + strand at 4472.459 kb on + strand at 4472.459 kb on + strand at 4472.459 kb on + strand at 4472.459 kb on + strand at 4472.459 kb on + strand at 4472.460 kb on - strand at 4472.460 kb on - strand at 4472.480 kb on + strand at 4472.480 kb on + strand at 4472.480 kb on + strand at 4472.480 kb on + strand at 4472.480 kb on + strand at 4472.481 kb on - strand at 4472.481 kb on - strand at 4472.484 kb on + strand at 4472.485 kb on - strand at 4472.506 kb on + strand at 4472.507 kb on - strand at 4472.639 kb on + strand, within Echvi_3752 at 4472.640 kb on - strand, within Echvi_3752 at 4472.662 kb on + strand, within Echvi_3752 at 4472.674 kb on + strand, within Echvi_3752 at 4472.674 kb on + strand, within Echvi_3752 at 4472.678 kb on - strand, within Echvi_3752 at 4472.692 kb on - strand, within Echvi_3752 at 4472.695 kb on + strand, within Echvi_3752 at 4472.695 kb on + strand, within Echvi_3752 at 4472.695 kb on + strand, within Echvi_3752 at 4472.696 kb on - strand, within Echvi_3752 at 4472.729 kb on + strand, within Echvi_3752 at 4472.729 kb on + strand, within Echvi_3752 at 4472.730 kb on - strand, within Echvi_3752 at 4472.730 kb on - strand, within Echvi_3752 at 4472.730 kb on - strand, within Echvi_3752 at 4472.730 kb on - strand, within Echvi_3752 at 4472.731 kb on + strand, within Echvi_3752 at 4472.731 kb on + strand, within Echvi_3752 at 4472.751 kb on + strand, within Echvi_3752 at 4472.854 kb on - strand, within Echvi_3752 at 4472.857 kb on + strand, within Echvi_3752 at 4472.857 kb on + strand, within Echvi_3752 at 4472.857 kb on + strand, within Echvi_3752 at 4472.857 kb on + strand, within Echvi_3752 at 4472.857 kb on + strand, within Echvi_3752 at 4472.857 kb on + strand, within Echvi_3752 at 4472.858 kb on - strand, within Echvi_3752 at 4472.876 kb on - strand, within Echvi_3752 at 4472.876 kb on - strand, within Echvi_3752 at 4472.911 kb on + strand, within Echvi_3752 at 4472.912 kb on - strand, within Echvi_3752 at 4472.967 kb on + strand, within Echvi_3752 at 4472.968 kb on - strand, within Echvi_3752 at 4472.968 kb on - strand, within Echvi_3752 at 4472.968 kb on - strand, within Echvi_3752 at 4472.979 kb on + strand, within Echvi_3752 at 4472.979 kb on + strand, within Echvi_3752 at 4473.034 kb on - strand, within Echvi_3752 at 4473.034 kb on - strand, within Echvi_3752 at 4473.092 kb on - strand, within Echvi_3752 at 4473.092 kb on - strand, within Echvi_3752 at 4473.106 kb on + strand, within Echvi_3752 at 4473.133 kb on + strand, within Echvi_3752 at 4473.134 kb on - strand, within Echvi_3752 at 4473.197 kb on + strand, within Echvi_3752 at 4473.197 kb on + strand, within Echvi_3752 at 4473.198 kb on - strand, within Echvi_3752 at 4473.247 kb on - strand, within Echvi_3752 at 4473.247 kb on - strand, within Echvi_3752 at 4473.295 kb on - strand, within Echvi_3752 at 4473.314 kb on + strand, within Echvi_3752 at 4473.314 kb on + strand, within Echvi_3752 at 4473.353 kb on - strand, within Echvi_3752 at 4473.456 kb on + strand, within Echvi_3752 at 4473.456 kb on + strand, within Echvi_3752 at 4473.456 kb on + strand, within Echvi_3752 at 4473.457 kb on - strand, within Echvi_3752 at 4473.457 kb on - strand, within Echvi_3752 at 4473.558 kb on - strand, within Echvi_3752 at 4473.654 kb on + strand, within Echvi_3752 at 4473.654 kb on + strand, within Echvi_3752 at 4473.654 kb on + strand, within Echvi_3752 at 4473.655 kb on - strand, within Echvi_3752 at 4473.655 kb on - strand, within Echvi_3752 at 4473.655 kb on - strand, within Echvi_3752 at 4473.666 kb on + strand, within Echvi_3752 at 4473.666 kb on + strand, within Echvi_3752 at 4473.667 kb on - strand, within Echvi_3752 at 4473.672 kb on + strand, within Echvi_3752 at 4473.800 kb on + strand, within Echvi_3752 at 4473.860 kb on - strand, within Echvi_3752 at 4473.877 kb on + strand, within Echvi_3752 at 4473.878 kb on - strand, within Echvi_3752 at 4473.878 kb on - strand, within Echvi_3752 at 4473.879 kb on + strand, within Echvi_3752 at 4473.880 kb on - strand, within Echvi_3752 at 4473.969 kb on + strand, within Echvi_3752 at 4473.973 kb on + strand, within Echvi_3752 at 4473.973 kb on + strand, within Echvi_3752 at 4473.974 kb on - strand, within Echvi_3752 at 4473.974 kb on - strand, within Echvi_3752 at 4474.007 kb on - strand, within Echvi_3752 at 4474.027 kb on + strand, within Echvi_3752 at 4474.092 kb on + strand, within Echvi_3752 at 4474.092 kb on + strand, within Echvi_3752 at 4474.230 kb on + strand, within Echvi_3752 at 4474.231 kb on - strand, within Echvi_3752 at 4474.231 kb on - strand, within Echvi_3752 at 4474.300 kb on + strand, within Echvi_3752 at 4474.304 kb on + strand, within Echvi_3752 at 4474.410 kb on + strand, within Echvi_3752 at 4474.411 kb on - strand, within Echvi_3752 at 4474.411 kb on - strand, within Echvi_3752 at 4474.437 kb on - strand, within Echvi_3752 at 4474.437 kb on - strand, within Echvi_3752 at 4474.443 kb on - strand, within Echvi_3752 at 4474.447 kb on + strand, within Echvi_3752 at 4474.448 kb on - strand, within Echvi_3752 at 4474.448 kb on - strand, within Echvi_3752 at 4474.496 kb on - strand, within Echvi_3752 at 4474.509 kb on - strand, within Echvi_3752 at 4474.706 kb on - strand, within Echvi_3752 at 4474.720 kb on - strand, within Echvi_3752 at 4474.720 kb on - strand, within Echvi_3752 at 4474.795 kb on + strand, within Echvi_3752 at 4474.808 kb on - strand, within Echvi_3752 at 4474.815 kb on + strand, within Echvi_3752 at 4474.857 kb on + strand, within Echvi_3752 at 4474.858 kb on - strand, within Echvi_3752 at 4474.889 kb on - strand, within Echvi_3752 at 4474.901 kb on - strand, within Echvi_3752 at 4474.904 kb on + strand, within Echvi_3752 at 4474.905 kb on - strand, within Echvi_3752 at 4474.947 kb on + strand, within Echvi_3752 at 4474.947 kb on + strand, within Echvi_3752 at 4474.947 kb on + strand, within Echvi_3752 at 4474.948 kb on - strand, within Echvi_3752 at 4474.948 kb on - strand, within Echvi_3752 at 4474.948 kb on - strand, within Echvi_3752 at 4475.044 kb on + strand, within Echvi_3752 at 4475.044 kb on + strand, within Echvi_3752 at 4475.044 kb on + strand, within Echvi_3752 at 4475.119 kb on + strand at 4475.161 kb on + strand at 4475.162 kb on - strand at 4475.214 kb on + strand at 4475.214 kb on + strand at 4475.306 kb on + strand at 4475.386 kb on + strand at 4475.387 kb on - strand at 4475.390 kb on + strand at 4475.390 kb on + strand at 4475.390 kb on + strand at 4475.391 kb on - strand at 4475.391 kb on - strand at 4475.400 kb on + strand at 4475.401 kb on - strand at 4475.408 kb on - strand at 4475.412 kb on + strand at 4475.413 kb on - strand at 4475.489 kb on + strand at 4475.501 kb on - strand, within Echvi_3753 at 4475.512 kb on + strand, within Echvi_3753 at 4475.517 kb on + strand, within Echvi_3753 at 4475.526 kb on - strand, within Echvi_3753 at 4475.583 kb on - strand, within Echvi_3753 at 4475.594 kb on - strand, within Echvi_3753 at 4475.594 kb on - strand, within Echvi_3753 at 4475.635 kb on + strand, within Echvi_3753 at 4475.680 kb on + strand at 4475.681 kb on - strand at 4475.764 kb on + strand at 4475.764 kb on + strand at 4475.765 kb on - strand at 4475.765 kb on - strand at 4475.765 kb on - strand at 4475.766 kb on + strand at 4475.766 kb on + strand at 4475.786 kb on + strand at 4475.787 kb on - strand at 4475.829 kb on + strand at 4475.829 kb on + strand at 4475.829 kb on + strand at 4475.830 kb on - strand at 4475.830 kb on - strand at 4476.007 kb on + strand at 4476.007 kb on + strand at 4476.018 kb on - strand at 4476.045 kb on - strand at 4476.047 kb on + strand at 4476.048 kb on - strand at 4476.248 kb on + strand at 4476.249 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 4,471,266 - Echvi_3751 0.43 +0.5 4,471,353 + Echvi_3751 0.49 -0.3 4,471,353 + Echvi_3751 0.49 -0.7 4,471,354 - Echvi_3751 0.49 -3.0 4,471,369 + Echvi_3751 0.50 +0.3 4,471,370 - Echvi_3751 0.50 +1.1 4,471,407 - Echvi_3751 0.52 -0.3 4,471,486 + Echvi_3751 0.57 +0.0 4,471,631 - Echvi_3751 0.65 -1.7 4,471,649 + Echvi_3751 0.66 -0.7 4,471,709 + Echvi_3751 0.70 -1.8 4,471,709 + Echvi_3751 0.70 +0.5 4,471,710 - Echvi_3751 0.70 +0.4 4,471,775 + Echvi_3751 0.74 -1.7 4,471,859 + Echvi_3751 0.79 -2.0 4,471,860 - Echvi_3751 0.79 -0.4 4,471,929 - Echvi_3751 0.83 -1.6 4,472,009 + Echvi_3751 0.88 +0.2 4,472,009 + Echvi_3751 0.88 -0.4 4,472,009 + Echvi_3751 0.88 +1.4 4,472,016 - Echvi_3751 0.88 -0.5 4,472,028 + Echvi_3751 0.89 +1.5 4,472,028 + Echvi_3751 0.89 +0.1 4,472,029 - Echvi_3751 0.89 -0.4 4,472,033 + Echvi_3751 0.89 -2.3 4,472,033 + Echvi_3751 0.89 +0.7 4,472,033 + Echvi_3751 0.89 +1.4 4,472,034 - Echvi_3751 0.90 -0.2 4,472,038 + Echvi_3751 0.90 -0.6 4,472,039 - Echvi_3751 0.90 -1.0 4,472,040 + Echvi_3751 0.90 -0.0 4,472,061 + -1.0 4,472,320 + -0.1 4,472,331 + -3.3 4,472,332 - +1.3 4,472,352 + +0.5 4,472,352 + -0.1 4,472,361 + +1.1 4,472,454 + -1.5 4,472,454 + +1.0 4,472,459 + -2.2 4,472,459 + -0.5 4,472,459 + -0.2 4,472,459 + +0.3 4,472,459 + +0.3 4,472,460 - +0.4 4,472,460 - -1.3 4,472,480 + -0.1 4,472,480 + +0.8 4,472,480 + +1.3 4,472,480 + +0.7 4,472,480 + +0.9 4,472,481 - -1.5 4,472,481 - +0.4 4,472,484 + -1.1 4,472,485 - +1.0 4,472,506 + -0.1 4,472,507 - -0.5 4,472,639 + Echvi_3752 0.13 -0.1 4,472,640 - Echvi_3752 0.13 -2.1 4,472,662 + Echvi_3752 0.14 -1.7 4,472,674 + Echvi_3752 0.14 +1.5 4,472,674 + Echvi_3752 0.14 -2.8 4,472,678 - Echvi_3752 0.14 -2.3 4,472,692 - Echvi_3752 0.15 -0.3 4,472,695 + Echvi_3752 0.15 +1.3 4,472,695 + Echvi_3752 0.15 +0.2 4,472,695 + Echvi_3752 0.15 +0.9 4,472,696 - Echvi_3752 0.15 -1.7 4,472,729 + Echvi_3752 0.16 -0.2 4,472,729 + Echvi_3752 0.16 -0.0 4,472,730 - Echvi_3752 0.16 +1.5 4,472,730 - Echvi_3752 0.16 -0.2 4,472,730 - Echvi_3752 0.16 -1.0 4,472,730 - Echvi_3752 0.16 +0.8 4,472,731 + Echvi_3752 0.16 -0.5 4,472,731 + Echvi_3752 0.16 -0.1 4,472,751 + Echvi_3752 0.17 +0.9 4,472,854 - Echvi_3752 0.20 -0.1 4,472,857 + Echvi_3752 0.20 -1.2 4,472,857 + Echvi_3752 0.20 +1.0 4,472,857 + Echvi_3752 0.20 +0.9 4,472,857 + Echvi_3752 0.20 +0.3 4,472,857 + Echvi_3752 0.20 -1.8 4,472,857 + Echvi_3752 0.20 -0.1 4,472,858 - Echvi_3752 0.20 +1.3 4,472,876 - Echvi_3752 0.21 +1.8 4,472,876 - Echvi_3752 0.21 -0.7 4,472,911 + Echvi_3752 0.22 -1.0 4,472,912 - Echvi_3752 0.22 +0.3 4,472,967 + Echvi_3752 0.23 +0.2 4,472,968 - Echvi_3752 0.23 +1.2 4,472,968 - Echvi_3752 0.23 -3.0 4,472,968 - Echvi_3752 0.23 +2.1 4,472,979 + Echvi_3752 0.24 -0.6 4,472,979 + Echvi_3752 0.24 -2.4 4,473,034 - Echvi_3752 0.26 -0.6 4,473,034 - Echvi_3752 0.26 +0.5 4,473,092 - Echvi_3752 0.27 +1.4 4,473,092 - Echvi_3752 0.27 +0.4 4,473,106 + Echvi_3752 0.28 +1.0 4,473,133 + Echvi_3752 0.29 +0.6 4,473,134 - Echvi_3752 0.29 -2.7 4,473,197 + Echvi_3752 0.31 -1.6 4,473,197 + Echvi_3752 0.31 +1.2 4,473,198 - Echvi_3752 0.31 +1.4 4,473,247 - Echvi_3752 0.32 +0.5 4,473,247 - Echvi_3752 0.32 +0.1 4,473,295 - Echvi_3752 0.34 +0.3 4,473,314 + Echvi_3752 0.34 +1.2 4,473,314 + Echvi_3752 0.34 -1.9 4,473,353 - Echvi_3752 0.36 +0.1 4,473,456 + Echvi_3752 0.39 +0.3 4,473,456 + Echvi_3752 0.39 -2.0 4,473,456 + Echvi_3752 0.39 -2.7 4,473,457 - Echvi_3752 0.39 +0.3 4,473,457 - Echvi_3752 0.39 -0.2 4,473,558 - Echvi_3752 0.42 +1.2 4,473,654 + Echvi_3752 0.45 +0.1 4,473,654 + Echvi_3752 0.45 +2.1 4,473,654 + Echvi_3752 0.45 -3.6 4,473,655 - Echvi_3752 0.45 -0.1 4,473,655 - Echvi_3752 0.45 +2.3 4,473,655 - Echvi_3752 0.45 +0.3 4,473,666 + Echvi_3752 0.46 +0.7 4,473,666 + Echvi_3752 0.46 -1.4 4,473,667 - Echvi_3752 0.46 -2.0 4,473,672 + Echvi_3752 0.46 -0.5 4,473,800 + Echvi_3752 0.50 +3.9 4,473,860 - Echvi_3752 0.52 +0.4 4,473,877 + Echvi_3752 0.52 +2.4 4,473,878 - Echvi_3752 0.52 +2.0 4,473,878 - Echvi_3752 0.52 +0.1 4,473,879 + Echvi_3752 0.52 +0.6 4,473,880 - Echvi_3752 0.52 -0.7 4,473,969 + Echvi_3752 0.55 +1.2 4,473,973 + Echvi_3752 0.55 +1.5 4,473,973 + Echvi_3752 0.55 -2.7 4,473,974 - Echvi_3752 0.55 +0.1 4,473,974 - Echvi_3752 0.55 +0.3 4,474,007 - Echvi_3752 0.56 +0.2 4,474,027 + Echvi_3752 0.57 -0.2 4,474,092 + Echvi_3752 0.59 -0.4 4,474,092 + Echvi_3752 0.59 +0.3 4,474,230 + Echvi_3752 0.63 +1.0 4,474,231 - Echvi_3752 0.63 +0.9 4,474,231 - Echvi_3752 0.63 +0.4 4,474,300 + Echvi_3752 0.66 -0.5 4,474,304 + Echvi_3752 0.66 +1.9 4,474,410 + Echvi_3752 0.69 +0.0 4,474,411 - Echvi_3752 0.69 -1.8 4,474,411 - Echvi_3752 0.69 +1.0 4,474,437 - Echvi_3752 0.70 +0.3 4,474,437 - Echvi_3752 0.70 +0.6 4,474,443 - Echvi_3752 0.70 -0.8 4,474,447 + Echvi_3752 0.70 +1.7 4,474,448 - Echvi_3752 0.70 +0.6 4,474,448 - Echvi_3752 0.70 +0.3 4,474,496 - Echvi_3752 0.72 +1.4 4,474,509 - Echvi_3752 0.72 +0.1 4,474,706 - Echvi_3752 0.78 +0.2 4,474,720 - Echvi_3752 0.79 -1.0 4,474,720 - Echvi_3752 0.79 -4.3 4,474,795 + Echvi_3752 0.81 -0.2 4,474,808 - Echvi_3752 0.82 +0.3 4,474,815 + Echvi_3752 0.82 +3.1 4,474,857 + Echvi_3752 0.83 +0.6 4,474,858 - Echvi_3752 0.83 +2.1 4,474,889 - Echvi_3752 0.84 -2.3 4,474,901 - Echvi_3752 0.85 +0.7 4,474,904 + Echvi_3752 0.85 +1.1 4,474,905 - Echvi_3752 0.85 -0.5 4,474,947 + Echvi_3752 0.86 -3.0 4,474,947 + Echvi_3752 0.86 -1.1 4,474,947 + Echvi_3752 0.86 +0.5 4,474,948 - Echvi_3752 0.86 +2.9 4,474,948 - Echvi_3752 0.86 +1.2 4,474,948 - Echvi_3752 0.86 -0.7 4,475,044 + Echvi_3752 0.89 -1.5 4,475,044 + Echvi_3752 0.89 -0.5 4,475,044 + Echvi_3752 0.89 +0.2 4,475,119 + -1.5 4,475,161 + +0.3 4,475,162 - +0.1 4,475,214 + +1.0 4,475,214 + +1.3 4,475,306 + +0.7 4,475,386 + +2.4 4,475,387 - +2.1 4,475,390 + +1.4 4,475,390 + +0.5 4,475,390 + +1.4 4,475,391 - +0.9 4,475,391 - +1.1 4,475,400 + +0.6 4,475,401 - +1.0 4,475,408 - -2.7 4,475,412 + -0.3 4,475,413 - -0.7 4,475,489 + +1.0 4,475,501 - Echvi_3753 0.14 -1.0 4,475,512 + Echvi_3753 0.20 +1.0 4,475,517 + Echvi_3753 0.23 +0.6 4,475,526 - Echvi_3753 0.28 +1.4 4,475,583 - Echvi_3753 0.60 -0.2 4,475,594 - Echvi_3753 0.66 -0.5 4,475,594 - Echvi_3753 0.66 +0.9 4,475,635 + Echvi_3753 0.89 -0.7 4,475,680 + -0.9 4,475,681 - -2.4 4,475,764 + +0.6 4,475,764 + -0.8 4,475,765 - +0.4 4,475,765 - -2.1 4,475,765 - -0.3 4,475,766 + +0.2 4,475,766 + -1.6 4,475,786 + -0.1 4,475,787 - -0.7 4,475,829 + -2.1 4,475,829 + -1.7 4,475,829 + -0.3 4,475,830 - -0.6 4,475,830 - -2.5 4,476,007 + -0.0 4,476,007 + +0.5 4,476,018 - +1.7 4,476,045 - +0.3 4,476,047 + -0.6 4,476,048 - +0.2 4,476,248 + +0.5 4,476,249 - +1.0
Or see this region's nucleotide sequence