Experiment: m.b. Doxycycline hyclate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_20255 and CA264_20260 overlap by 4 nucleotides CA264_20260 and CA264_20265 overlap by 26 nucleotides CA264_20265 and CA264_20270 are separated by 141 nucleotides
CA264_20255: CA264_20255 - hypothetical protein, at 4,672,320 to 4,672,859
_20255
CA264_20260: CA264_20260 - hypothetical protein, at 4,672,856 to 4,673,812
_20260
CA264_20265: CA264_20265 - hypothetical protein, at 4,673,787 to 4,674,179
_20265
CA264_20270: CA264_20270 - hypothetical protein, at 4,674,321 to 4,675,253
_20270
Position (kb) 4673
4674
4675 Strain fitness (log2 ratio) -2
-1
0
1 at 4672.860 kb on - strand at 4672.976 kb on - strand, within CA264_20260 at 4672.991 kb on - strand, within CA264_20260 at 4673.026 kb on + strand, within CA264_20260 at 4673.026 kb on + strand, within CA264_20260 at 4673.038 kb on + strand, within CA264_20260 at 4673.039 kb on - strand, within CA264_20260 at 4673.113 kb on + strand, within CA264_20260 at 4673.211 kb on + strand, within CA264_20260 at 4673.212 kb on - strand, within CA264_20260 at 4673.212 kb on - strand, within CA264_20260 at 4673.212 kb on - strand, within CA264_20260 at 4673.217 kb on + strand, within CA264_20260 at 4673.376 kb on + strand, within CA264_20260 at 4673.376 kb on + strand, within CA264_20260 at 4673.380 kb on - strand, within CA264_20260 at 4673.461 kb on - strand, within CA264_20260 at 4673.559 kb on + strand, within CA264_20260 at 4673.560 kb on - strand, within CA264_20260 at 4673.713 kb on + strand, within CA264_20260 at 4673.763 kb on + strand at 4673.769 kb on - strand at 4673.824 kb on - strand at 4674.082 kb on - strand, within CA264_20265 at 4674.111 kb on + strand, within CA264_20265 at 4674.157 kb on + strand at 4674.157 kb on + strand at 4674.189 kb on + strand at 4674.297 kb on + strand at 4674.299 kb on + strand at 4674.299 kb on + strand at 4674.379 kb on + strand at 4674.407 kb on - strand at 4674.467 kb on + strand, within CA264_20270 at 4674.495 kb on + strand, within CA264_20270 at 4674.506 kb on + strand, within CA264_20270 at 4674.507 kb on - strand, within CA264_20270 at 4674.558 kb on + strand, within CA264_20270 at 4674.559 kb on - strand, within CA264_20270 at 4674.644 kb on + strand, within CA264_20270 at 4674.645 kb on - strand, within CA264_20270 at 4674.932 kb on + strand, within CA264_20270 at 4674.933 kb on - strand, within CA264_20270 at 4674.933 kb on - strand, within CA264_20270 at 4674.999 kb on + strand, within CA264_20270 at 4675.156 kb on + strand, within CA264_20270 at 4675.156 kb on + strand, within CA264_20270
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml remove 4,672,860 - -0.3 4,672,976 - CA264_20260 0.13 +1.1 4,672,991 - CA264_20260 0.14 +0.5 4,673,026 + CA264_20260 0.18 +1.1 4,673,026 + CA264_20260 0.18 -0.9 4,673,038 + CA264_20260 0.19 -1.2 4,673,039 - CA264_20260 0.19 +0.2 4,673,113 + CA264_20260 0.27 +0.1 4,673,211 + CA264_20260 0.37 +0.2 4,673,212 - CA264_20260 0.37 +0.4 4,673,212 - CA264_20260 0.37 -0.3 4,673,212 - CA264_20260 0.37 -0.1 4,673,217 + CA264_20260 0.38 +0.7 4,673,376 + CA264_20260 0.54 +1.0 4,673,376 + CA264_20260 0.54 +0.4 4,673,380 - CA264_20260 0.55 +0.7 4,673,461 - CA264_20260 0.63 +0.2 4,673,559 + CA264_20260 0.73 +0.1 4,673,560 - CA264_20260 0.74 +0.3 4,673,713 + CA264_20260 0.90 -0.6 4,673,763 + -0.4 4,673,769 - -0.5 4,673,824 - +0.5 4,674,082 - CA264_20265 0.75 +0.2 4,674,111 + CA264_20265 0.82 +0.0 4,674,157 + +0.1 4,674,157 + -0.0 4,674,189 + +0.0 4,674,297 + +0.3 4,674,299 + +0.5 4,674,299 + +0.9 4,674,379 + +0.1 4,674,407 - -0.2 4,674,467 + CA264_20270 0.16 +0.2 4,674,495 + CA264_20270 0.19 -2.3 4,674,506 + CA264_20270 0.20 -1.1 4,674,507 - CA264_20270 0.20 -0.2 4,674,558 + CA264_20270 0.25 -0.6 4,674,559 - CA264_20270 0.26 +0.0 4,674,644 + CA264_20270 0.35 -0.3 4,674,645 - CA264_20270 0.35 -1.2 4,674,932 + CA264_20270 0.65 -0.1 4,674,933 - CA264_20270 0.66 -1.3 4,674,933 - CA264_20270 0.66 -0.5 4,674,999 + CA264_20270 0.73 +0.2 4,675,156 + CA264_20270 0.89 -0.4 4,675,156 + CA264_20270 0.89 +0.3
Or see this region's nucleotide sequence