Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13760

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13755 and CA264_13760 are separated by 301 nucleotidesCA264_13760 and CA264_13765 are separated by 366 nucleotides CA264_13755: CA264_13755 - cystathionine beta-synthase, at 3,213,808 to 3,214,791 _13755 CA264_13760: CA264_13760 - succinate--CoA ligase subunit alpha, at 3,215,093 to 3,215,983 _13760 CA264_13765: CA264_13765 - DNA-binding transcriptional regulator OxyR, at 3,216,350 to 3,217,294 _13765 Position (kb) 3215 3216Strain fitness (log2 ratio) -2 -1 0 1 2at 3214.169 kb on + strand, within CA264_13755at 3214.410 kb on - strand, within CA264_13755at 3214.726 kb on + strandat 3214.755 kb on + strandat 3214.804 kb on - strandat 3214.822 kb on + strandat 3214.831 kb on + strandat 3214.995 kb on - strandat 3214.996 kb on + strandat 3214.997 kb on - strandat 3215.000 kb on - strandat 3215.009 kb on + strandat 3215.049 kb on - strandat 3215.054 kb on - strandat 3215.054 kb on - strandat 3215.054 kb on - strandat 3215.070 kb on + strandat 3215.070 kb on + strandat 3215.972 kb on - strandat 3215.982 kb on - strandat 3215.982 kb on - strandat 3215.982 kb on - strandat 3215.995 kb on - strandat 3215.995 kb on - strandat 3216.001 kb on + strandat 3216.053 kb on - strandat 3216.053 kb on - strandat 3216.131 kb on - strandat 3216.131 kb on - strandat 3216.131 kb on - strandat 3216.131 kb on - strandat 3216.131 kb on - strandat 3216.131 kb on - strandat 3216.134 kb on + strandat 3216.192 kb on - strandat 3216.203 kb on - strandat 3216.206 kb on + strandat 3216.272 kb on + strandat 3216.272 kb on + strandat 3216.272 kb on + strandat 3216.281 kb on + strandat 3216.281 kb on + strandat 3216.288 kb on + strandat 3216.411 kb on - strandat 3216.412 kb on + strandat 3216.622 kb on + strand, within CA264_13765at 3216.622 kb on + strand, within CA264_13765at 3216.752 kb on + strand, within CA264_13765at 3216.792 kb on + strand, within CA264_13765at 3216.792 kb on + strand, within CA264_13765at 3216.792 kb on + strand, within CA264_13765at 3216.810 kb on + strand, within CA264_13765at 3216.896 kb on + strand, within CA264_13765

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml
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3,214,169 + CA264_13755 0.37 -1.8
3,214,410 - CA264_13755 0.61 -2.1
3,214,726 + -1.6
3,214,755 + -1.5
3,214,804 - +0.0
3,214,822 + +1.6
3,214,831 + -0.7
3,214,995 - -0.2
3,214,996 + -0.8
3,214,997 - -2.5
3,215,000 - +0.2
3,215,009 + +0.7
3,215,049 - -0.1
3,215,054 - +0.4
3,215,054 - -0.0
3,215,054 - +0.2
3,215,070 + -0.5
3,215,070 + -0.9
3,215,972 - +0.1
3,215,982 - -0.3
3,215,982 - -0.4
3,215,982 - +1.4
3,215,995 - -0.3
3,215,995 - -2.1
3,216,001 + +0.5
3,216,053 - -0.2
3,216,053 - -0.1
3,216,131 - -0.9
3,216,131 - +0.6
3,216,131 - +0.2
3,216,131 - +0.5
3,216,131 - -0.3
3,216,131 - -0.6
3,216,134 + +1.6
3,216,192 - -0.3
3,216,203 - -0.6
3,216,206 + -0.5
3,216,272 + -0.6
3,216,272 + -0.1
3,216,272 + -0.1
3,216,281 + +0.4
3,216,281 + +0.6
3,216,288 + -0.9
3,216,411 - -0.7
3,216,412 + -0.7
3,216,622 + CA264_13765 0.29 -0.2
3,216,622 + CA264_13765 0.29 +0.7
3,216,752 + CA264_13765 0.43 +1.8
3,216,792 + CA264_13765 0.47 +0.4
3,216,792 + CA264_13765 0.47 -0.6
3,216,792 + CA264_13765 0.47 +0.5
3,216,810 + CA264_13765 0.49 +0.1
3,216,896 + CA264_13765 0.58 +0.9

Or see this region's nucleotide sequence