Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13510

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13500 and CA264_13505 are separated by 22 nucleotidesCA264_13505 and CA264_13510 are separated by 23 nucleotidesCA264_13510 and CA264_13515 are separated by 16 nucleotidesCA264_13515 and CA264_13520 are separated by 59 nucleotides CA264_13500: CA264_13500 - hypothetical protein, at 3,153,599 to 3,154,099 _13500 CA264_13505: CA264_13505 - hypothetical protein, at 3,154,122 to 3,154,676 _13505 CA264_13510: CA264_13510 - hypothetical protein, at 3,154,700 to 3,156,700 _13510 CA264_13515: CA264_13515 - glyoxalase/bleomycin resistance/dioxygenase family protein, at 3,156,717 to 3,157,139 _13515 CA264_13520: CA264_13520 - thioredoxin family protein, at 3,157,199 to 3,157,843 _13520 Position (kb) 3154 3155 3156 3157Strain fitness (log2 ratio) -1 0 1 2at 3153.760 kb on + strand, within CA264_13500at 3153.761 kb on - strand, within CA264_13500at 3153.886 kb on + strand, within CA264_13500at 3153.910 kb on - strand, within CA264_13500at 3153.915 kb on - strand, within CA264_13500at 3153.980 kb on + strand, within CA264_13500at 3153.980 kb on + strand, within CA264_13500at 3153.981 kb on - strand, within CA264_13500at 3153.986 kb on + strand, within CA264_13500at 3153.987 kb on - strand, within CA264_13500at 3153.987 kb on - strand, within CA264_13500at 3154.008 kb on + strand, within CA264_13500at 3154.009 kb on - strand, within CA264_13500at 3154.009 kb on - strand, within CA264_13500at 3154.009 kb on - strand, within CA264_13500at 3154.092 kb on - strandat 3154.092 kb on - strandat 3154.096 kb on - strandat 3154.096 kb on - strandat 3154.096 kb on - strandat 3154.096 kb on - strandat 3154.099 kb on + strandat 3154.099 kb on + strandat 3154.099 kb on + strandat 3154.099 kb on + strandat 3154.100 kb on - strandat 3154.108 kb on - strandat 3154.150 kb on - strandat 3154.161 kb on + strandat 3154.174 kb on - strandat 3154.316 kb on + strand, within CA264_13505at 3154.317 kb on - strand, within CA264_13505at 3154.561 kb on + strand, within CA264_13505at 3154.561 kb on + strand, within CA264_13505at 3154.621 kb on - strandat 3154.688 kb on + strandat 3154.689 kb on - strandat 3154.719 kb on + strandat 3154.720 kb on - strandat 3154.844 kb on + strandat 3154.845 kb on - strandat 3155.022 kb on - strand, within CA264_13510at 3155.037 kb on + strand, within CA264_13510at 3155.116 kb on - strand, within CA264_13510at 3155.495 kb on + strand, within CA264_13510at 3155.550 kb on + strand, within CA264_13510at 3155.550 kb on + strand, within CA264_13510at 3155.562 kb on + strand, within CA264_13510at 3155.563 kb on - strand, within CA264_13510at 3155.563 kb on - strand, within CA264_13510at 3155.563 kb on - strand, within CA264_13510at 3155.563 kb on - strand, within CA264_13510at 3155.747 kb on + strand, within CA264_13510at 3155.795 kb on + strand, within CA264_13510at 3155.795 kb on + strand, within CA264_13510at 3155.836 kb on + strand, within CA264_13510at 3155.837 kb on - strand, within CA264_13510at 3155.837 kb on - strand, within CA264_13510at 3155.843 kb on + strand, within CA264_13510at 3155.843 kb on + strand, within CA264_13510at 3155.844 kb on - strand, within CA264_13510at 3155.852 kb on - strand, within CA264_13510at 3155.950 kb on + strand, within CA264_13510at 3155.978 kb on - strand, within CA264_13510at 3156.049 kb on - strand, within CA264_13510at 3156.075 kb on - strand, within CA264_13510at 3156.238 kb on - strand, within CA264_13510at 3156.369 kb on - strand, within CA264_13510at 3156.412 kb on + strand, within CA264_13510at 3156.699 kb on - strandat 3156.699 kb on - strandat 3156.708 kb on + strandat 3156.709 kb on - strandat 3156.788 kb on - strand, within CA264_13515at 3156.861 kb on + strand, within CA264_13515at 3156.972 kb on + strand, within CA264_13515at 3156.973 kb on - strand, within CA264_13515at 3156.992 kb on + strand, within CA264_13515at 3156.993 kb on - strand, within CA264_13515at 3156.993 kb on - strand, within CA264_13515at 3157.003 kb on + strand, within CA264_13515at 3157.078 kb on + strand, within CA264_13515at 3157.085 kb on - strand, within CA264_13515at 3157.085 kb on - strand, within CA264_13515at 3157.138 kb on - strandat 3157.175 kb on + strandat 3157.181 kb on + strandat 3157.181 kb on + strandat 3157.267 kb on + strand, within CA264_13520at 3157.267 kb on + strand, within CA264_13520at 3157.476 kb on + strand, within CA264_13520at 3157.477 kb on - strand, within CA264_13520at 3157.520 kb on + strand, within CA264_13520at 3157.613 kb on + strand, within CA264_13520

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml
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3,153,760 + CA264_13500 0.32 +0.0
3,153,761 - CA264_13500 0.32 -0.0
3,153,886 + CA264_13500 0.57 -0.0
3,153,910 - CA264_13500 0.62 +0.1
3,153,915 - CA264_13500 0.63 +0.2
3,153,980 + CA264_13500 0.76 +0.0
3,153,980 + CA264_13500 0.76 +0.7
3,153,981 - CA264_13500 0.76 +0.4
3,153,986 + CA264_13500 0.77 +0.1
3,153,987 - CA264_13500 0.77 +1.1
3,153,987 - CA264_13500 0.77 +0.3
3,154,008 + CA264_13500 0.82 +0.3
3,154,009 - CA264_13500 0.82 +0.3
3,154,009 - CA264_13500 0.82 -0.2
3,154,009 - CA264_13500 0.82 +1.0
3,154,092 - +0.1
3,154,092 - -0.8
3,154,096 - -0.1
3,154,096 - +1.0
3,154,096 - +0.5
3,154,096 - -0.6
3,154,099 + -0.1
3,154,099 + -0.2
3,154,099 + -0.0
3,154,099 + -0.1
3,154,100 - +0.5
3,154,108 - -0.9
3,154,150 - +0.7
3,154,161 + +0.1
3,154,174 - -0.1
3,154,316 + CA264_13505 0.35 -0.2
3,154,317 - CA264_13505 0.35 +0.1
3,154,561 + CA264_13505 0.79 +0.3
3,154,561 + CA264_13505 0.79 +0.6
3,154,621 - -0.5
3,154,688 + +0.1
3,154,689 - +0.0
3,154,719 + -0.7
3,154,720 - +0.1
3,154,844 + +0.5
3,154,845 - -1.6
3,155,022 - CA264_13510 0.16 +0.8
3,155,037 + CA264_13510 0.17 -0.4
3,155,116 - CA264_13510 0.21 +0.3
3,155,495 + CA264_13510 0.40 +1.0
3,155,550 + CA264_13510 0.42 +0.4
3,155,550 + CA264_13510 0.42 +2.2
3,155,562 + CA264_13510 0.43 +0.0
3,155,563 - CA264_13510 0.43 +0.0
3,155,563 - CA264_13510 0.43 +0.4
3,155,563 - CA264_13510 0.43 -0.2
3,155,563 - CA264_13510 0.43 +0.4
3,155,747 + CA264_13510 0.52 +0.3
3,155,795 + CA264_13510 0.55 -1.5
3,155,795 + CA264_13510 0.55 +0.2
3,155,836 + CA264_13510 0.57 +0.6
3,155,837 - CA264_13510 0.57 +0.7
3,155,837 - CA264_13510 0.57 +0.8
3,155,843 + CA264_13510 0.57 +0.3
3,155,843 + CA264_13510 0.57 +1.0
3,155,844 - CA264_13510 0.57 +1.4
3,155,852 - CA264_13510 0.58 +0.3
3,155,950 + CA264_13510 0.62 +0.9
3,155,978 - CA264_13510 0.64 -0.1
3,156,049 - CA264_13510 0.67 +0.4
3,156,075 - CA264_13510 0.69 +1.1
3,156,238 - CA264_13510 0.77 +0.5
3,156,369 - CA264_13510 0.83 +0.7
3,156,412 + CA264_13510 0.86 -0.3
3,156,699 - -0.0
3,156,699 - +0.1
3,156,708 + +0.0
3,156,709 - -0.1
3,156,788 - CA264_13515 0.17 +0.5
3,156,861 + CA264_13515 0.34 +1.6
3,156,972 + CA264_13515 0.60 -0.8
3,156,973 - CA264_13515 0.61 -0.1
3,156,992 + CA264_13515 0.65 +0.2
3,156,993 - CA264_13515 0.65 +0.4
3,156,993 - CA264_13515 0.65 +1.1
3,157,003 + CA264_13515 0.68 -0.2
3,157,078 + CA264_13515 0.85 +0.1
3,157,085 - CA264_13515 0.87 +0.1
3,157,085 - CA264_13515 0.87 -0.1
3,157,138 - -0.0
3,157,175 + -0.1
3,157,181 + +0.5
3,157,181 + -0.8
3,157,267 + CA264_13520 0.11 -0.3
3,157,267 + CA264_13520 0.11 +0.4
3,157,476 + CA264_13520 0.43 -0.5
3,157,477 - CA264_13520 0.43 +0.0
3,157,520 + CA264_13520 0.50 +0.0
3,157,613 + CA264_13520 0.64 -0.6

Or see this region's nucleotide sequence