Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11660

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11655 and CA264_11660 are separated by 154 nucleotidesCA264_11660 and CA264_11665 are separated by 49 nucleotides CA264_11655: CA264_11655 - hypothetical protein, at 2,719,504 to 2,719,740 _11655 CA264_11660: CA264_11660 - hypothetical protein, at 2,719,895 to 2,720,293 _11660 CA264_11665: CA264_11665 - DDE transposase, at 2,720,343 to 2,721,113 _11665 Position (kb) 2719 2720 2721Strain fitness (log2 ratio) -2 -1 0 1at 2718.927 kb on - strandat 2718.940 kb on + strandat 2719.002 kb on + strandat 2719.003 kb on - strandat 2719.023 kb on - strandat 2719.023 kb on - strandat 2719.026 kb on - strandat 2719.052 kb on + strandat 2719.053 kb on - strandat 2719.053 kb on - strandat 2719.053 kb on - strandat 2719.056 kb on - strandat 2719.075 kb on - strandat 2719.075 kb on - strandat 2719.109 kb on + strandat 2719.109 kb on + strandat 2719.120 kb on - strandat 2719.120 kb on - strandat 2719.156 kb on + strandat 2719.157 kb on - strandat 2719.216 kb on - strandat 2719.216 kb on - strandat 2719.219 kb on - strandat 2719.319 kb on - strandat 2719.399 kb on + strandat 2719.412 kb on - strandat 2719.417 kb on - strandat 2719.417 kb on - strandat 2719.420 kb on + strandat 2719.421 kb on - strandat 2719.421 kb on - strandat 2719.421 kb on - strandat 2719.421 kb on - strandat 2719.424 kb on + strandat 2719.429 kb on + strandat 2719.430 kb on - strandat 2719.430 kb on - strandat 2719.430 kb on - strandat 2719.430 kb on - strandat 2719.467 kb on - strandat 2719.624 kb on + strand, within CA264_11655at 2719.624 kb on + strand, within CA264_11655at 2720.310 kb on + strandat 2720.327 kb on + strandat 2720.349 kb on - strandat 2720.386 kb on - strandat 2720.585 kb on - strand, within CA264_11665at 2720.721 kb on + strand, within CA264_11665at 2720.820 kb on + strand, within CA264_11665at 2720.821 kb on - strand, within CA264_11665at 2720.924 kb on - strand, within CA264_11665at 2720.924 kb on - strand, within CA264_11665at 2720.926 kb on + strand, within CA264_11665at 2720.927 kb on - strand, within CA264_11665at 2720.930 kb on - strand, within CA264_11665at 2721.113 kb on + strandat 2721.136 kb on - strandat 2721.136 kb on - strandat 2721.193 kb on + strandat 2721.217 kb on + strandat 2721.227 kb on - strandat 2721.272 kb on - strandat 2721.277 kb on + strandat 2721.285 kb on + strandat 2721.286 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml
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2,718,927 - -0.6
2,718,940 + +0.4
2,719,002 + -0.3
2,719,003 - +0.9
2,719,023 - -0.0
2,719,023 - +0.4
2,719,026 - +0.5
2,719,052 + +0.0
2,719,053 - -0.0
2,719,053 - +1.0
2,719,053 - +0.8
2,719,056 - +0.7
2,719,075 - +0.6
2,719,075 - -2.1
2,719,109 + -0.4
2,719,109 + -0.4
2,719,120 - +0.2
2,719,120 - -0.0
2,719,156 + -0.3
2,719,157 - +0.0
2,719,216 - -0.6
2,719,216 - +0.4
2,719,219 - -0.5
2,719,319 - -0.4
2,719,399 + -0.7
2,719,412 - -0.2
2,719,417 - +0.2
2,719,417 - -1.1
2,719,420 + -1.7
2,719,421 - -0.6
2,719,421 - -0.7
2,719,421 - -0.1
2,719,421 - +0.5
2,719,424 + -0.4
2,719,429 + -0.2
2,719,430 - -0.2
2,719,430 - -0.8
2,719,430 - +0.1
2,719,430 - +0.5
2,719,467 - +0.1
2,719,624 + CA264_11655 0.51 +1.0
2,719,624 + CA264_11655 0.51 +1.1
2,720,310 + +0.2
2,720,327 + -0.9
2,720,349 - -0.0
2,720,386 - -0.5
2,720,585 - CA264_11665 0.31 +0.4
2,720,721 + CA264_11665 0.49 +0.3
2,720,820 + CA264_11665 0.62 +0.3
2,720,821 - CA264_11665 0.62 +0.8
2,720,924 - CA264_11665 0.75 +0.2
2,720,924 - CA264_11665 0.75 +0.8
2,720,926 + CA264_11665 0.76 +0.9
2,720,927 - CA264_11665 0.76 +0.1
2,720,930 - CA264_11665 0.76 -1.5
2,721,113 + -0.1
2,721,136 - -0.2
2,721,136 - -0.1
2,721,193 + -0.8
2,721,217 + -0.2
2,721,227 - -0.3
2,721,272 - -0.5
2,721,277 + +1.2
2,721,285 + -0.3
2,721,286 - -0.1

Or see this region's nucleotide sequence