Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09965

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09955 and CA264_09960 overlap by 4 nucleotidesCA264_09960 and CA264_09965 are separated by 51 nucleotidesCA264_09965 and CA264_09970 overlap by 19 nucleotides CA264_09955: CA264_09955 - hypothetical protein, at 2,318,410 to 2,319,039 _09955 CA264_09960: CA264_09960 - hypothetical protein, at 2,319,036 to 2,319,689 _09960 CA264_09965: CA264_09965 - conjugal transfer protein TraI, at 2,319,741 to 2,320,418 _09965 CA264_09970: CA264_09970 - conjugal transfer protein TraG, at 2,320,400 to 2,322,910 _09970 Position (kb) 2319 2320 2321Strain fitness (log2 ratio) -2 -1 0 1at 2318.800 kb on + strand, within CA264_09955at 2318.800 kb on + strand, within CA264_09955at 2318.801 kb on - strand, within CA264_09955at 2319.457 kb on + strand, within CA264_09960at 2319.457 kb on + strand, within CA264_09960at 2319.458 kb on - strand, within CA264_09960at 2319.544 kb on + strand, within CA264_09960at 2319.545 kb on - strand, within CA264_09960at 2319.545 kb on - strand, within CA264_09960at 2319.587 kb on - strand, within CA264_09960at 2319.673 kb on - strandat 2319.673 kb on - strandat 2319.673 kb on - strandat 2319.689 kb on + strandat 2319.689 kb on + strandat 2319.713 kb on + strandat 2319.714 kb on - strandat 2319.942 kb on + strand, within CA264_09965at 2319.942 kb on + strand, within CA264_09965at 2319.997 kb on + strand, within CA264_09965at 2319.998 kb on - strand, within CA264_09965at 2320.298 kb on + strand, within CA264_09965at 2320.392 kb on + strandat 2320.393 kb on - strandat 2320.393 kb on - strandat 2320.393 kb on - strandat 2320.402 kb on - strandat 2320.516 kb on - strandat 2320.523 kb on + strandat 2320.523 kb on + strandat 2320.523 kb on + strandat 2320.762 kb on + strand, within CA264_09970at 2320.762 kb on + strand, within CA264_09970at 2320.782 kb on - strand, within CA264_09970at 2320.814 kb on - strand, within CA264_09970at 2320.814 kb on - strand, within CA264_09970at 2320.820 kb on + strand, within CA264_09970at 2320.852 kb on - strand, within CA264_09970at 2320.878 kb on + strand, within CA264_09970at 2320.887 kb on + strand, within CA264_09970at 2320.887 kb on + strand, within CA264_09970at 2320.888 kb on - strand, within CA264_09970at 2321.127 kb on + strand, within CA264_09970at 2321.143 kb on - strand, within CA264_09970at 2321.183 kb on - strand, within CA264_09970at 2321.227 kb on - strand, within CA264_09970at 2321.280 kb on + strand, within CA264_09970at 2321.280 kb on + strand, within CA264_09970at 2321.281 kb on - strand, within CA264_09970

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml
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2,318,800 + CA264_09955 0.62 +0.4
2,318,800 + CA264_09955 0.62 -0.6
2,318,801 - CA264_09955 0.62 -1.0
2,319,457 + CA264_09960 0.64 -0.3
2,319,457 + CA264_09960 0.64 -0.9
2,319,458 - CA264_09960 0.65 -2.0
2,319,544 + CA264_09960 0.78 -0.0
2,319,545 - CA264_09960 0.78 -0.6
2,319,545 - CA264_09960 0.78 -2.3
2,319,587 - CA264_09960 0.84 +0.2
2,319,673 - -0.7
2,319,673 - +0.1
2,319,673 - -1.1
2,319,689 + +0.3
2,319,689 + -0.8
2,319,713 + -0.6
2,319,714 - +0.1
2,319,942 + CA264_09965 0.30 +1.2
2,319,942 + CA264_09965 0.30 -0.2
2,319,997 + CA264_09965 0.38 +1.7
2,319,998 - CA264_09965 0.38 -1.2
2,320,298 + CA264_09965 0.82 -0.9
2,320,392 + -0.1
2,320,393 - -0.8
2,320,393 - -0.2
2,320,393 - -1.5
2,320,402 - -0.3
2,320,516 - -0.8
2,320,523 + +1.4
2,320,523 + -0.8
2,320,523 + +0.7
2,320,762 + CA264_09970 0.14 -1.3
2,320,762 + CA264_09970 0.14 +0.8
2,320,782 - CA264_09970 0.15 -0.6
2,320,814 - CA264_09970 0.16 -0.7
2,320,814 - CA264_09970 0.16 +0.8
2,320,820 + CA264_09970 0.17 -1.2
2,320,852 - CA264_09970 0.18 +0.5
2,320,878 + CA264_09970 0.19 -0.6
2,320,887 + CA264_09970 0.19 -1.1
2,320,887 + CA264_09970 0.19 +0.6
2,320,888 - CA264_09970 0.19 -1.5
2,321,127 + CA264_09970 0.29 -0.2
2,321,143 - CA264_09970 0.30 -0.7
2,321,183 - CA264_09970 0.31 -0.3
2,321,227 - CA264_09970 0.33 -1.0
2,321,280 + CA264_09970 0.35 -0.6
2,321,280 + CA264_09970 0.35 +0.5
2,321,281 - CA264_09970 0.35 -0.5

Or see this region's nucleotide sequence