Experiment: m.b. Doxycycline hyclate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_07725 and CA264_07730 are separated by 239 nucleotides CA264_07730 and CA264_07735 are separated by 261 nucleotides CA264_07735 and CA264_07740 are separated by 217 nucleotides
CA264_07725: CA264_07725 - glutamate 5-kinase, at 1,791,419 to 1,792,510
_07725
CA264_07730: CA264_07730 - pyrroline-5-carboxylate reductase, at 1,792,750 to 1,793,574
_07730
CA264_07735: CA264_07735 - hypothetical protein, at 1,793,836 to 1,794,042
_07735
CA264_07740: CA264_07740 - TIGR02757 family protein, at 1,794,260 to 1,795,036
_07740
Position (kb)
1792
1793
1794 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1791.814 kb on + strand, within CA264_07725 at 1791.816 kb on + strand, within CA264_07725 at 1791.817 kb on - strand, within CA264_07725 at 1791.817 kb on - strand, within CA264_07725 at 1791.817 kb on - strand, within CA264_07725 at 1791.824 kb on + strand, within CA264_07725 at 1791.824 kb on + strand, within CA264_07725 at 1791.825 kb on - strand, within CA264_07725 at 1791.825 kb on - strand, within CA264_07725 at 1791.825 kb on - strand, within CA264_07725 at 1791.889 kb on + strand, within CA264_07725 at 1791.909 kb on + strand, within CA264_07725 at 1791.910 kb on - strand, within CA264_07725 at 1791.984 kb on + strand, within CA264_07725 at 1791.985 kb on - strand, within CA264_07725 at 1791.985 kb on - strand, within CA264_07725 at 1792.120 kb on + strand, within CA264_07725 at 1792.248 kb on + strand, within CA264_07725 at 1792.248 kb on + strand, within CA264_07725 at 1792.249 kb on - strand, within CA264_07725 at 1792.249 kb on - strand, within CA264_07725 at 1792.256 kb on + strand, within CA264_07725 at 1792.261 kb on + strand, within CA264_07725 at 1792.262 kb on - strand, within CA264_07725 at 1792.266 kb on - strand, within CA264_07725 at 1792.323 kb on - strand, within CA264_07725 at 1792.740 kb on - strand at 1792.748 kb on + strand at 1792.752 kb on - strand at 1792.799 kb on + strand at 1792.800 kb on - strand at 1792.822 kb on - strand at 1792.866 kb on + strand, within CA264_07730 at 1792.941 kb on + strand, within CA264_07730 at 1792.942 kb on - strand, within CA264_07730 at 1792.942 kb on - strand, within CA264_07730 at 1793.031 kb on + strand, within CA264_07730 at 1793.043 kb on + strand, within CA264_07730 at 1793.044 kb on - strand, within CA264_07730 at 1793.231 kb on - strand, within CA264_07730 at 1793.231 kb on - strand, within CA264_07730 at 1793.246 kb on - strand, within CA264_07730 at 1793.259 kb on + strand, within CA264_07730 at 1793.261 kb on + strand, within CA264_07730 at 1793.261 kb on + strand, within CA264_07730 at 1793.272 kb on - strand, within CA264_07730 at 1793.336 kb on - strand, within CA264_07730 at 1793.474 kb on + strand, within CA264_07730 at 1793.475 kb on - strand, within CA264_07730 at 1793.475 kb on - strand, within CA264_07730 at 1793.492 kb on + strand at 1793.506 kb on - strand at 1793.557 kb on + strand at 1793.557 kb on + strand at 1793.557 kb on + strand at 1793.557 kb on + strand at 1793.558 kb on - strand at 1793.563 kb on - strand at 1793.593 kb on + strand at 1793.593 kb on + strand at 1793.594 kb on - strand at 1793.594 kb on - strand at 1793.596 kb on - strand at 1793.684 kb on + strand at 1793.684 kb on + strand at 1793.685 kb on - strand at 1793.685 kb on - strand at 1793.685 kb on - strand at 1793.694 kb on - strand at 1793.779 kb on + strand at 1793.785 kb on - strand at 1793.952 kb on + strand, within CA264_07735 at 1793.953 kb on - strand, within CA264_07735 at 1793.997 kb on + strand, within CA264_07735 at 1793.997 kb on + strand, within CA264_07735 at 1794.034 kb on - strand at 1794.066 kb on - strand at 1794.088 kb on + strand at 1794.304 kb on - strand at 1794.304 kb on - strand at 1794.516 kb on + strand, within CA264_07740
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml remove 1,791,814 + CA264_07725 0.36 +0.3 1,791,816 + CA264_07725 0.36 +0.9 1,791,817 - CA264_07725 0.36 +0.2 1,791,817 - CA264_07725 0.36 +0.0 1,791,817 - CA264_07725 0.36 -0.3 1,791,824 + CA264_07725 0.37 +0.1 1,791,824 + CA264_07725 0.37 -0.5 1,791,825 - CA264_07725 0.37 -0.2 1,791,825 - CA264_07725 0.37 +1.7 1,791,825 - CA264_07725 0.37 +1.6 1,791,889 + CA264_07725 0.43 +0.7 1,791,909 + CA264_07725 0.45 -0.2 1,791,910 - CA264_07725 0.45 +1.1 1,791,984 + CA264_07725 0.52 +1.0 1,791,985 - CA264_07725 0.52 +0.2 1,791,985 - CA264_07725 0.52 +0.1 1,792,120 + CA264_07725 0.64 +0.9 1,792,248 + CA264_07725 0.76 +0.1 1,792,248 + CA264_07725 0.76 +0.2 1,792,249 - CA264_07725 0.76 +0.6 1,792,249 - CA264_07725 0.76 +0.3 1,792,256 + CA264_07725 0.77 +0.9 1,792,261 + CA264_07725 0.77 +0.7 1,792,262 - CA264_07725 0.77 +1.3 1,792,266 - CA264_07725 0.78 +0.5 1,792,323 - CA264_07725 0.83 -0.3 1,792,740 - -1.6 1,792,748 + -0.0 1,792,752 - -0.7 1,792,799 + +0.2 1,792,800 - +0.1 1,792,822 - +0.3 1,792,866 + CA264_07730 0.14 +0.9 1,792,941 + CA264_07730 0.23 -1.0 1,792,942 - CA264_07730 0.23 -2.8 1,792,942 - CA264_07730 0.23 -0.2 1,793,031 + CA264_07730 0.34 +0.9 1,793,043 + CA264_07730 0.36 +1.2 1,793,044 - CA264_07730 0.36 +0.8 1,793,231 - CA264_07730 0.58 +0.1 1,793,231 - CA264_07730 0.58 -0.3 1,793,246 - CA264_07730 0.60 -1.2 1,793,259 + CA264_07730 0.62 +1.1 1,793,261 + CA264_07730 0.62 -0.2 1,793,261 + CA264_07730 0.62 +0.5 1,793,272 - CA264_07730 0.63 -1.7 1,793,336 - CA264_07730 0.71 +0.3 1,793,474 + CA264_07730 0.88 +0.0 1,793,475 - CA264_07730 0.88 +0.1 1,793,475 - CA264_07730 0.88 +0.3 1,793,492 + -1.3 1,793,506 - +0.7 1,793,557 + -0.5 1,793,557 + -0.3 1,793,557 + -1.8 1,793,557 + +0.0 1,793,558 - +0.3 1,793,563 - +0.0 1,793,593 + -0.5 1,793,593 + +0.3 1,793,594 - -0.9 1,793,594 - -1.7 1,793,596 - -0.6 1,793,684 + -0.9 1,793,684 + -0.0 1,793,685 - -4.5 1,793,685 - -0.9 1,793,685 - -2.0 1,793,694 - -2.7 1,793,779 + +0.4 1,793,785 - -0.3 1,793,952 + CA264_07735 0.56 -1.7 1,793,953 - CA264_07735 0.57 -1.3 1,793,997 + CA264_07735 0.78 -1.2 1,793,997 + CA264_07735 0.78 -0.9 1,794,034 - -1.7 1,794,066 - -2.6 1,794,088 + -1.8 1,794,304 - -0.6 1,794,304 - -1.1 1,794,516 + CA264_07740 0.33 -0.0
Or see this region's nucleotide sequence