Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_04930

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_04925 and CA264_04930 are separated by 183 nucleotidesCA264_04930 and CA264_04935 are separated by 232 nucleotides CA264_04925: CA264_04925 - hypothetical protein, at 1,142,707 to 1,143,771 _04925 CA264_04930: CA264_04930 - DNA polymerase III subunit delta, at 1,143,955 to 1,145,001 _04930 CA264_04935: CA264_04935 - hypothetical protein, at 1,145,234 to 1,148,374 _04935 Position (kb) 1143 1144 1145 1146Strain fitness (log2 ratio) -3 -2 -1 0 1at 1143.006 kb on - strand, within CA264_04925at 1143.006 kb on - strand, within CA264_04925at 1143.023 kb on + strand, within CA264_04925at 1143.024 kb on - strand, within CA264_04925at 1143.158 kb on + strand, within CA264_04925at 1143.158 kb on + strand, within CA264_04925at 1143.161 kb on + strand, within CA264_04925at 1143.162 kb on - strand, within CA264_04925at 1143.192 kb on - strand, within CA264_04925at 1143.211 kb on - strand, within CA264_04925at 1143.261 kb on + strand, within CA264_04925at 1143.433 kb on + strand, within CA264_04925at 1143.487 kb on + strand, within CA264_04925at 1143.531 kb on + strand, within CA264_04925at 1143.542 kb on - strand, within CA264_04925at 1143.542 kb on - strand, within CA264_04925at 1143.588 kb on + strand, within CA264_04925at 1143.628 kb on + strand, within CA264_04925at 1143.641 kb on + strand, within CA264_04925at 1143.641 kb on + strand, within CA264_04925at 1143.641 kb on + strand, within CA264_04925at 1143.642 kb on - strand, within CA264_04925at 1143.642 kb on - strand, within CA264_04925at 1143.733 kb on + strandat 1143.779 kb on + strandat 1143.779 kb on + strandat 1143.779 kb on + strandat 1143.779 kb on + strandat 1143.779 kb on + strandat 1145.011 kb on + strandat 1145.015 kb on + strandat 1145.015 kb on + strandat 1145.016 kb on - strandat 1145.053 kb on + strandat 1145.054 kb on - strandat 1145.054 kb on - strandat 1145.054 kb on - strandat 1145.054 kb on - strandat 1145.055 kb on + strandat 1145.069 kb on + strandat 1145.069 kb on + strandat 1145.089 kb on - strandat 1145.129 kb on + strandat 1145.130 kb on - strandat 1145.178 kb on + strandat 1145.178 kb on + strandat 1145.179 kb on - strandat 1145.191 kb on - strandat 1145.229 kb on + strandat 1145.230 kb on - strandat 1145.234 kb on - strandat 1145.241 kb on + strandat 1145.923 kb on + strand, within CA264_04935

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml
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1,143,006 - CA264_04925 0.28 -0.9
1,143,006 - CA264_04925 0.28 -0.9
1,143,023 + CA264_04925 0.30 -0.9
1,143,024 - CA264_04925 0.30 -0.1
1,143,158 + CA264_04925 0.42 -0.4
1,143,158 + CA264_04925 0.42 -0.9
1,143,161 + CA264_04925 0.43 -0.0
1,143,162 - CA264_04925 0.43 +1.1
1,143,192 - CA264_04925 0.46 -0.8
1,143,211 - CA264_04925 0.47 -0.4
1,143,261 + CA264_04925 0.52 -1.2
1,143,433 + CA264_04925 0.68 -0.5
1,143,487 + CA264_04925 0.73 -0.0
1,143,531 + CA264_04925 0.77 -0.4
1,143,542 - CA264_04925 0.78 -0.5
1,143,542 - CA264_04925 0.78 -1.1
1,143,588 + CA264_04925 0.83 +1.1
1,143,628 + CA264_04925 0.86 -1.3
1,143,641 + CA264_04925 0.88 +0.5
1,143,641 + CA264_04925 0.88 -1.6
1,143,641 + CA264_04925 0.88 -1.0
1,143,642 - CA264_04925 0.88 -0.9
1,143,642 - CA264_04925 0.88 +0.6
1,143,733 + -1.0
1,143,779 + -2.5
1,143,779 + -0.3
1,143,779 + -1.1
1,143,779 + +0.4
1,143,779 + -0.7
1,145,011 + -2.1
1,145,015 + +0.1
1,145,015 + +0.5
1,145,016 - -0.3
1,145,053 + +0.8
1,145,054 - +0.0
1,145,054 - +0.2
1,145,054 - -0.8
1,145,054 - -0.2
1,145,055 + +0.2
1,145,069 + -0.6
1,145,069 + +0.1
1,145,089 - +1.0
1,145,129 + +0.7
1,145,130 - +0.4
1,145,178 + +1.2
1,145,178 + +0.3
1,145,179 - +0.4
1,145,191 - -0.5
1,145,229 + +1.0
1,145,230 - -0.2
1,145,234 - +1.5
1,145,241 + -3.0
1,145,923 + CA264_04935 0.22 -2.1

Or see this region's nucleotide sequence