Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03405

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03395 and CA264_03400 are separated by 237 nucleotidesCA264_03400 and CA264_03405 overlap by 4 nucleotidesCA264_03405 and CA264_03410 are separated by 81 nucleotides CA264_03395: CA264_03395 - phospholipase, at 792,414 to 793,115 _03395 CA264_03400: CA264_03400 - hypothetical protein, at 793,353 to 793,886 _03400 CA264_03405: CA264_03405 - hypothetical protein, at 793,883 to 794,497 _03405 CA264_03410: CA264_03410 - glutamine amidotransferase, at 794,579 to 795,499 _03410 CA264_03415: CA264_03415 - amidoligase, at 795,487 to 796,491 _03415 Position (kb) 793 794 795Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 792.903 kb on + strand, within CA264_03395at 792.904 kb on - strand, within CA264_03395at 792.939 kb on - strand, within CA264_03395at 792.983 kb on + strand, within CA264_03395at 793.028 kb on - strand, within CA264_03395at 793.028 kb on - strand, within CA264_03395at 793.032 kb on + strand, within CA264_03395at 793.032 kb on + strand, within CA264_03395at 793.033 kb on - strand, within CA264_03395at 793.035 kb on - strand, within CA264_03395at 793.079 kb on + strandat 793.113 kb on + strandat 793.194 kb on + strandat 793.195 kb on - strandat 793.195 kb on - strandat 793.195 kb on - strandat 793.195 kb on - strandat 793.196 kb on + strandat 793.196 kb on + strandat 793.197 kb on - strandat 793.197 kb on - strandat 793.292 kb on + strandat 793.352 kb on + strandat 793.365 kb on - strandat 793.389 kb on + strandat 793.390 kb on - strandat 793.397 kb on - strandat 793.397 kb on - strandat 793.440 kb on + strand, within CA264_03400at 793.450 kb on - strand, within CA264_03400at 793.483 kb on + strand, within CA264_03400at 793.487 kb on - strand, within CA264_03400at 793.557 kb on + strand, within CA264_03400at 793.557 kb on + strand, within CA264_03400at 793.558 kb on - strand, within CA264_03400at 793.558 kb on - strand, within CA264_03400at 793.563 kb on + strand, within CA264_03400at 793.668 kb on - strand, within CA264_03400at 793.844 kb on - strandat 793.892 kb on - strandat 793.903 kb on + strandat 793.904 kb on - strandat 793.906 kb on - strandat 793.929 kb on - strandat 793.968 kb on + strand, within CA264_03405at 794.214 kb on + strand, within CA264_03405at 794.215 kb on - strand, within CA264_03405at 794.237 kb on + strand, within CA264_03405at 794.237 kb on + strand, within CA264_03405at 794.238 kb on - strand, within CA264_03405at 794.251 kb on - strand, within CA264_03405at 794.251 kb on - strand, within CA264_03405at 794.255 kb on + strand, within CA264_03405at 794.256 kb on - strand, within CA264_03405at 794.257 kb on + strand, within CA264_03405at 794.482 kb on + strandat 794.483 kb on - strandat 794.483 kb on - strandat 794.484 kb on + strandat 794.485 kb on - strandat 794.485 kb on - strandat 794.485 kb on - strandat 794.485 kb on - strandat 794.604 kb on - strandat 794.663 kb on + strandat 794.663 kb on + strandat 794.676 kb on - strand, within CA264_03410at 794.720 kb on + strand, within CA264_03410at 794.721 kb on - strand, within CA264_03410at 794.769 kb on + strand, within CA264_03410at 794.929 kb on + strand, within CA264_03410at 794.929 kb on + strand, within CA264_03410at 794.933 kb on + strand, within CA264_03410at 794.933 kb on + strand, within CA264_03410at 794.933 kb on + strand, within CA264_03410at 794.934 kb on - strand, within CA264_03410at 794.934 kb on - strand, within CA264_03410at 794.934 kb on - strand, within CA264_03410at 794.954 kb on - strand, within CA264_03410at 794.954 kb on - strand, within CA264_03410at 794.979 kb on + strand, within CA264_03410at 795.001 kb on - strand, within CA264_03410at 795.019 kb on - strand, within CA264_03410at 795.020 kb on + strand, within CA264_03410at 795.236 kb on + strand, within CA264_03410at 795.236 kb on + strand, within CA264_03410at 795.237 kb on - strand, within CA264_03410at 795.283 kb on + strand, within CA264_03410at 795.283 kb on + strand, within CA264_03410at 795.294 kb on - strand, within CA264_03410

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml
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792,903 + CA264_03395 0.70 -0.1
792,904 - CA264_03395 0.70 -0.1
792,939 - CA264_03395 0.75 +0.2
792,983 + CA264_03395 0.81 -0.8
793,028 - CA264_03395 0.87 -0.1
793,028 - CA264_03395 0.87 +0.9
793,032 + CA264_03395 0.88 -1.1
793,032 + CA264_03395 0.88 +0.1
793,033 - CA264_03395 0.88 -1.2
793,035 - CA264_03395 0.88 -0.4
793,079 + -0.3
793,113 + -1.5
793,194 + +0.0
793,195 - +0.1
793,195 - -0.8
793,195 - +0.6
793,195 - -0.6
793,196 + +0.2
793,196 + +0.0
793,197 - -0.0
793,197 - -1.3
793,292 + +0.8
793,352 + +0.4
793,365 - +1.4
793,389 + +0.5
793,390 - +0.3
793,397 - -0.1
793,397 - -0.1
793,440 + CA264_03400 0.16 +0.9
793,450 - CA264_03400 0.18 +0.0
793,483 + CA264_03400 0.24 -0.4
793,487 - CA264_03400 0.25 +0.9
793,557 + CA264_03400 0.38 -0.1
793,557 + CA264_03400 0.38 +2.1
793,558 - CA264_03400 0.38 -0.8
793,558 - CA264_03400 0.38 +0.4
793,563 + CA264_03400 0.39 +0.0
793,668 - CA264_03400 0.59 +0.6
793,844 - +0.0
793,892 - -0.7
793,903 + -0.1
793,904 - -1.3
793,906 - -0.1
793,929 - +0.5
793,968 + CA264_03405 0.14 -0.2
794,214 + CA264_03405 0.54 -0.1
794,215 - CA264_03405 0.54 +0.2
794,237 + CA264_03405 0.58 -2.9
794,237 + CA264_03405 0.58 +0.5
794,238 - CA264_03405 0.58 -0.2
794,251 - CA264_03405 0.60 -0.3
794,251 - CA264_03405 0.60 +0.1
794,255 + CA264_03405 0.60 +0.5
794,256 - CA264_03405 0.61 -0.3
794,257 + CA264_03405 0.61 -0.0
794,482 + -1.1
794,483 - -0.1
794,483 - +0.6
794,484 + +1.0
794,485 - +0.4
794,485 - +1.1
794,485 - +0.2
794,485 - +0.7
794,604 - -0.1
794,663 + +0.5
794,663 + -0.2
794,676 - CA264_03410 0.11 -1.0
794,720 + CA264_03410 0.15 +0.0
794,721 - CA264_03410 0.15 +0.8
794,769 + CA264_03410 0.21 -0.0
794,929 + CA264_03410 0.38 -0.5
794,929 + CA264_03410 0.38 -0.8
794,933 + CA264_03410 0.38 -0.1
794,933 + CA264_03410 0.38 +0.6
794,933 + CA264_03410 0.38 -0.1
794,934 - CA264_03410 0.39 +0.1
794,934 - CA264_03410 0.39 +0.0
794,934 - CA264_03410 0.39 -1.0
794,954 - CA264_03410 0.41 +0.8
794,954 - CA264_03410 0.41 -0.3
794,979 + CA264_03410 0.43 -0.1
795,001 - CA264_03410 0.46 +1.0
795,019 - CA264_03410 0.48 -0.6
795,020 + CA264_03410 0.48 -0.7
795,236 + CA264_03410 0.71 -0.8
795,236 + CA264_03410 0.71 -1.5
795,237 - CA264_03410 0.71 +2.8
795,283 + CA264_03410 0.76 -0.7
795,283 + CA264_03410 0.76 +0.1
795,294 - CA264_03410 0.78 +0.8

Or see this region's nucleotide sequence