Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03345

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_03335 and CA264_03340 are separated by 1 nucleotidesCA264_03340 and CA264_03345 are separated by 545 nucleotidesCA264_03345 and CA264_03350 overlap by 14 nucleotidesCA264_03350 and CA264_03355 are separated by 98 nucleotides CA264_03335: CA264_03335 - glyoxylate/hydroxypyruvate reductase A, at 781,307 to 782,236 _03335 CA264_03340: CA264_03340 - dioxygenase, at 782,238 to 782,651 _03340 CA264_03345: CA264_03345 - hypothetical protein, at 783,197 to 784,594 _03345 CA264_03350: CA264_03350 - RNA polymerase subunit sigma-24, at 784,581 to 785,180 _03350 CA264_03355: CA264_03355 - VWA domain-containing protein, at 785,279 to 787,144 _03355 Position (kb) 783 784 785Strain fitness (log2 ratio) -2 -1 0 1 2at 782.234 kb on + strandat 782.235 kb on - strandat 782.235 kb on - strandat 782.296 kb on - strand, within CA264_03340at 782.303 kb on + strand, within CA264_03340at 782.304 kb on - strand, within CA264_03340at 782.306 kb on - strand, within CA264_03340at 782.409 kb on + strand, within CA264_03340at 782.410 kb on - strand, within CA264_03340at 782.422 kb on + strand, within CA264_03340at 782.460 kb on - strand, within CA264_03340at 782.480 kb on + strand, within CA264_03340at 782.481 kb on - strand, within CA264_03340at 782.513 kb on + strand, within CA264_03340at 782.514 kb on - strand, within CA264_03340at 782.536 kb on - strand, within CA264_03340at 782.666 kb on + strandat 782.932 kb on - strandat 782.946 kb on + strandat 782.964 kb on + strandat 782.973 kb on + strandat 782.977 kb on + strandat 782.977 kb on + strandat 782.978 kb on - strandat 782.990 kb on + strandat 782.997 kb on + strandat 782.998 kb on - strandat 783.005 kb on - strandat 783.012 kb on + strandat 783.012 kb on + strandat 783.012 kb on + strandat 783.012 kb on + strandat 783.014 kb on + strandat 783.014 kb on + strandat 783.015 kb on - strandat 783.015 kb on - strandat 783.021 kb on - strandat 783.028 kb on - strandat 783.136 kb on + strandat 783.137 kb on - strandat 783.137 kb on - strandat 783.137 kb on - strandat 783.137 kb on - strandat 783.137 kb on - strandat 783.140 kb on - strandat 783.140 kb on - strandat 783.199 kb on - strandat 783.199 kb on - strandat 783.203 kb on - strandat 783.214 kb on + strandat 783.214 kb on + strandat 783.381 kb on - strand, within CA264_03345at 783.381 kb on - strand, within CA264_03345at 783.509 kb on + strand, within CA264_03345at 783.603 kb on + strand, within CA264_03345at 783.649 kb on - strand, within CA264_03345at 783.669 kb on - strand, within CA264_03345at 784.000 kb on + strand, within CA264_03345at 784.059 kb on - strand, within CA264_03345at 784.059 kb on - strand, within CA264_03345at 784.095 kb on + strand, within CA264_03345at 784.096 kb on - strand, within CA264_03345at 784.112 kb on - strand, within CA264_03345at 784.156 kb on + strand, within CA264_03345at 784.168 kb on + strand, within CA264_03345at 784.169 kb on - strand, within CA264_03345at 784.197 kb on - strand, within CA264_03345at 784.220 kb on + strand, within CA264_03345at 784.221 kb on - strand, within CA264_03345at 784.238 kb on + strand, within CA264_03345at 784.238 kb on + strand, within CA264_03345at 784.239 kb on - strand, within CA264_03345at 784.239 kb on - strand, within CA264_03345at 784.239 kb on - strand, within CA264_03345at 784.266 kb on + strand, within CA264_03345at 784.273 kb on - strand, within CA264_03345at 784.275 kb on + strand, within CA264_03345at 784.305 kb on - strand, within CA264_03345at 784.305 kb on - strand, within CA264_03345at 784.365 kb on - strand, within CA264_03345at 784.377 kb on - strand, within CA264_03345at 784.377 kb on - strand, within CA264_03345at 784.571 kb on + strandat 784.571 kb on + strandat 784.572 kb on - strandat 784.583 kb on - strandat 784.642 kb on + strand, within CA264_03350at 784.692 kb on - strand, within CA264_03350at 784.693 kb on + strand, within CA264_03350at 784.730 kb on + strand, within CA264_03350at 784.732 kb on + strand, within CA264_03350at 784.732 kb on + strand, within CA264_03350at 784.732 kb on + strand, within CA264_03350at 784.732 kb on + strand, within CA264_03350at 784.945 kb on - strand, within CA264_03350at 785.044 kb on + strand, within CA264_03350at 785.188 kb on - strandat 785.190 kb on - strandat 785.190 kb on - strandat 785.236 kb on - strandat 785.255 kb on + strandat 785.255 kb on + strandat 785.256 kb on - strandat 785.451 kb on - strandat 785.459 kb on + strandat 785.460 kb on - strandat 785.529 kb on + strand, within CA264_03355at 785.529 kb on + strand, within CA264_03355at 785.530 kb on - strand, within CA264_03355at 785.530 kb on - strand, within CA264_03355at 785.559 kb on + strand, within CA264_03355at 785.559 kb on + strand, within CA264_03355at 785.559 kb on + strand, within CA264_03355at 785.560 kb on - strand, within CA264_03355

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml
remove
782,234 + -0.4
782,235 - -0.1
782,235 - -0.3
782,296 - CA264_03340 0.14 -0.3
782,303 + CA264_03340 0.16 -0.3
782,304 - CA264_03340 0.16 -0.7
782,306 - CA264_03340 0.16 -0.9
782,409 + CA264_03340 0.41 +0.0
782,410 - CA264_03340 0.42 +0.2
782,422 + CA264_03340 0.44 +1.4
782,460 - CA264_03340 0.54 -0.0
782,480 + CA264_03340 0.58 +0.1
782,481 - CA264_03340 0.59 +0.9
782,513 + CA264_03340 0.66 -0.5
782,514 - CA264_03340 0.67 -0.6
782,536 - CA264_03340 0.72 +0.2
782,666 + -0.4
782,932 - +0.2
782,946 + -0.3
782,964 + -0.2
782,973 + +0.2
782,977 + +0.5
782,977 + +0.5
782,978 - -0.4
782,990 + +0.5
782,997 + +0.2
782,998 - -0.2
783,005 - +0.1
783,012 + +1.6
783,012 + -0.3
783,012 + -0.4
783,012 + +0.6
783,014 + -0.6
783,014 + +0.2
783,015 - +1.2
783,015 - +0.9
783,021 - +0.1
783,028 - -0.1
783,136 + +0.6
783,137 - +2.2
783,137 - +0.1
783,137 - +0.5
783,137 - -0.4
783,137 - -0.8
783,140 - +0.0
783,140 - -0.6
783,199 - +0.2
783,199 - +0.3
783,203 - +0.2
783,214 + +0.6
783,214 + -0.0
783,381 - CA264_03345 0.13 -0.3
783,381 - CA264_03345 0.13 +0.1
783,509 + CA264_03345 0.22 -1.2
783,603 + CA264_03345 0.29 -1.5
783,649 - CA264_03345 0.32 -0.2
783,669 - CA264_03345 0.34 -1.1
784,000 + CA264_03345 0.57 +0.6
784,059 - CA264_03345 0.62 -0.7
784,059 - CA264_03345 0.62 -0.2
784,095 + CA264_03345 0.64 -0.1
784,096 - CA264_03345 0.64 -0.1
784,112 - CA264_03345 0.65 -0.9
784,156 + CA264_03345 0.69 +0.0
784,168 + CA264_03345 0.69 +0.1
784,169 - CA264_03345 0.70 +1.8
784,197 - CA264_03345 0.72 +0.8
784,220 + CA264_03345 0.73 -1.1
784,221 - CA264_03345 0.73 -1.0
784,238 + CA264_03345 0.74 +1.2
784,238 + CA264_03345 0.74 -0.2
784,239 - CA264_03345 0.75 +0.2
784,239 - CA264_03345 0.75 +0.1
784,239 - CA264_03345 0.75 -0.7
784,266 + CA264_03345 0.76 -0.0
784,273 - CA264_03345 0.77 +0.5
784,275 + CA264_03345 0.77 -0.6
784,305 - CA264_03345 0.79 -1.0
784,305 - CA264_03345 0.79 +0.2
784,365 - CA264_03345 0.84 -2.1
784,377 - CA264_03345 0.84 +0.8
784,377 - CA264_03345 0.84 -0.5
784,571 + -2.4
784,571 + -0.2
784,572 - -0.6
784,583 - +1.5
784,642 + CA264_03350 0.10 +1.2
784,692 - CA264_03350 0.18 -0.5
784,693 + CA264_03350 0.19 +0.0
784,730 + CA264_03350 0.25 +0.8
784,732 + CA264_03350 0.25 +0.8
784,732 + CA264_03350 0.25 +0.0
784,732 + CA264_03350 0.25 -0.3
784,732 + CA264_03350 0.25 -0.2
784,945 - CA264_03350 0.61 -0.2
785,044 + CA264_03350 0.77 +0.2
785,188 - +0.2
785,190 - -0.3
785,190 - -0.2
785,236 - -0.1
785,255 + -0.3
785,255 + -0.9
785,256 - +0.5
785,451 - +0.1
785,459 + +0.4
785,460 - -0.8
785,529 + CA264_03355 0.13 +1.5
785,529 + CA264_03355 0.13 -1.8
785,530 - CA264_03355 0.13 -0.2
785,530 - CA264_03355 0.13 +0.7
785,559 + CA264_03355 0.15 +0.2
785,559 + CA264_03355 0.15 -0.0
785,559 + CA264_03355 0.15 +0.5
785,560 - CA264_03355 0.15 -0.2

Or see this region's nucleotide sequence