Experiment: m.b. Doxycycline hyclate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02335 and CA264_02340 are separated by 343 nucleotides CA264_02340 and CA264_02345 are separated by 165 nucleotides CA264_02345 and CA264_02350 are separated by 25 nucleotides
CA264_02335: CA264_02335 - hypothetical protein, at 539,545 to 540,114
_02335
CA264_02340: CA264_02340 - hypothetical protein, at 540,458 to 541,957
_02340
CA264_02345: CA264_02345 - restriction endonuclease, at 542,123 to 542,416
_02345
CA264_02350: CA264_02350 - nicotinate phosphoribosyltransferase, at 542,442 to 543,908
_02350
Position (kb) 540
541
542 Strain fitness (log2 ratio) -2
-1
0
1
2 at 539.469 kb on - strand at 539.469 kb on - strand at 539.476 kb on + strand at 539.477 kb on - strand at 539.483 kb on + strand at 539.501 kb on + strand at 539.510 kb on + strand at 539.511 kb on - strand at 539.524 kb on - strand at 539.538 kb on - strand at 539.624 kb on + strand, within CA264_02335 at 539.624 kb on + strand, within CA264_02335 at 539.625 kb on - strand, within CA264_02335 at 539.795 kb on + strand, within CA264_02335 at 539.796 kb on - strand, within CA264_02335 at 539.796 kb on - strand, within CA264_02335 at 539.861 kb on - strand, within CA264_02335 at 539.936 kb on - strand, within CA264_02335 at 539.960 kb on - strand, within CA264_02335 at 539.960 kb on - strand, within CA264_02335 at 540.048 kb on + strand, within CA264_02335 at 540.051 kb on + strand, within CA264_02335 at 540.052 kb on - strand, within CA264_02335 at 540.052 kb on - strand, within CA264_02335 at 540.060 kb on + strand at 540.060 kb on + strand at 540.060 kb on + strand at 540.061 kb on - strand at 540.061 kb on - strand at 540.061 kb on - strand at 540.061 kb on - strand at 540.061 kb on - strand at 540.112 kb on + strand at 540.113 kb on - strand at 540.156 kb on + strand at 540.245 kb on + strand at 540.389 kb on - strand at 540.390 kb on + strand at 540.390 kb on + strand at 540.391 kb on - strand at 540.391 kb on - strand at 540.393 kb on + strand at 540.393 kb on + strand at 540.393 kb on + strand at 540.394 kb on - strand at 540.400 kb on + strand at 540.401 kb on - strand at 540.506 kb on - strand at 540.510 kb on + strand at 540.563 kb on - strand at 540.576 kb on + strand at 540.747 kb on + strand, within CA264_02340 at 540.779 kb on - strand, within CA264_02340 at 540.924 kb on - strand, within CA264_02340 at 540.937 kb on - strand, within CA264_02340 at 540.939 kb on - strand, within CA264_02340 at 541.018 kb on + strand, within CA264_02340 at 541.019 kb on - strand, within CA264_02340 at 541.054 kb on + strand, within CA264_02340 at 541.055 kb on - strand, within CA264_02340 at 541.063 kb on + strand, within CA264_02340 at 541.097 kb on - strand, within CA264_02340 at 541.122 kb on - strand, within CA264_02340 at 541.151 kb on + strand, within CA264_02340 at 541.152 kb on - strand, within CA264_02340 at 541.152 kb on - strand, within CA264_02340 at 541.152 kb on - strand, within CA264_02340 at 541.161 kb on - strand, within CA264_02340 at 541.161 kb on - strand, within CA264_02340 at 541.368 kb on + strand, within CA264_02340 at 541.407 kb on - strand, within CA264_02340 at 541.407 kb on - strand, within CA264_02340 at 541.407 kb on - strand, within CA264_02340 at 541.553 kb on - strand, within CA264_02340 at 541.555 kb on - strand, within CA264_02340 at 541.571 kb on + strand, within CA264_02340 at 541.571 kb on + strand, within CA264_02340 at 541.572 kb on - strand, within CA264_02340 at 541.572 kb on - strand, within CA264_02340 at 541.573 kb on + strand, within CA264_02340 at 541.695 kb on - strand, within CA264_02340 at 541.814 kb on + strand at 541.846 kb on - strand at 541.874 kb on + strand at 541.875 kb on - strand at 541.883 kb on + strand at 541.884 kb on - strand at 542.030 kb on - strand at 542.030 kb on - strand at 542.030 kb on - strand at 542.035 kb on - strand at 542.092 kb on + strand at 542.095 kb on + strand at 542.096 kb on - strand at 542.096 kb on - strand at 542.098 kb on - strand at 542.098 kb on - strand at 542.098 kb on - strand at 542.098 kb on - strand at 542.119 kb on - strand at 542.127 kb on + strand at 542.149 kb on - strand at 542.149 kb on - strand at 542.149 kb on - strand at 542.151 kb on + strand at 542.151 kb on + strand at 542.281 kb on + strand, within CA264_02345 at 542.282 kb on - strand, within CA264_02345 at 542.306 kb on + strand, within CA264_02345 at 542.311 kb on + strand, within CA264_02345 at 542.312 kb on - strand, within CA264_02345 at 542.312 kb on - strand, within CA264_02345 at 542.314 kb on + strand, within CA264_02345 at 542.314 kb on + strand, within CA264_02345 at 542.314 kb on + strand, within CA264_02345 at 542.414 kb on + strand at 542.489 kb on - strand at 542.522 kb on - strand at 542.535 kb on + strand at 542.547 kb on + strand at 542.548 kb on - strand at 542.569 kb on - strand at 542.583 kb on - strand at 542.584 kb on + strand at 542.584 kb on + strand at 542.585 kb on - strand at 542.585 kb on - strand at 542.585 kb on - strand at 542.594 kb on + strand, within CA264_02350 at 542.594 kb on + strand, within CA264_02350 at 542.616 kb on - strand, within CA264_02350 at 542.617 kb on + strand, within CA264_02350 at 542.617 kb on + strand, within CA264_02350 at 542.618 kb on - strand, within CA264_02350 at 542.622 kb on - strand, within CA264_02350 at 542.660 kb on + strand, within CA264_02350 at 542.751 kb on - strand, within CA264_02350 at 542.752 kb on + strand, within CA264_02350 at 542.753 kb on - strand, within CA264_02350 at 542.786 kb on - strand, within CA264_02350 at 542.852 kb on + strand, within CA264_02350 at 542.853 kb on - strand, within CA264_02350 at 542.853 kb on - strand, within CA264_02350 at 542.854 kb on + strand, within CA264_02350 at 542.891 kb on - strand, within CA264_02350
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml remove 539,469 - +1.1 539,469 - -0.2 539,476 + -0.2 539,477 - -0.4 539,483 + -0.4 539,501 + +0.6 539,510 + -0.8 539,511 - -0.0 539,524 - +0.5 539,538 - -0.7 539,624 + CA264_02335 0.14 +0.4 539,624 + CA264_02335 0.14 -0.5 539,625 - CA264_02335 0.14 -0.4 539,795 + CA264_02335 0.44 +1.8 539,796 - CA264_02335 0.44 -0.1 539,796 - CA264_02335 0.44 +0.2 539,861 - CA264_02335 0.55 +0.5 539,936 - CA264_02335 0.69 -0.2 539,960 - CA264_02335 0.73 -0.6 539,960 - CA264_02335 0.73 +0.3 540,048 + CA264_02335 0.88 -0.2 540,051 + CA264_02335 0.89 -0.5 540,052 - CA264_02335 0.89 +1.1 540,052 - CA264_02335 0.89 +0.7 540,060 + +0.4 540,060 + -0.4 540,060 + +1.4 540,061 - -0.8 540,061 - +1.0 540,061 - -0.1 540,061 - -0.1 540,061 - -0.2 540,112 + -0.0 540,113 - -0.1 540,156 + +1.0 540,245 + -0.1 540,389 - +0.1 540,390 + -0.6 540,390 + -0.8 540,391 - -0.9 540,391 - +0.1 540,393 + +0.1 540,393 + +0.3 540,393 + -0.1 540,394 - -0.5 540,400 + +0.3 540,401 - -0.2 540,506 - -1.9 540,510 + +0.2 540,563 - +0.3 540,576 + +0.2 540,747 + CA264_02340 0.19 +0.3 540,779 - CA264_02340 0.21 -0.8 540,924 - CA264_02340 0.31 -0.0 540,937 - CA264_02340 0.32 +0.1 540,939 - CA264_02340 0.32 -0.2 541,018 + CA264_02340 0.37 -0.3 541,019 - CA264_02340 0.37 +0.3 541,054 + CA264_02340 0.40 -0.4 541,055 - CA264_02340 0.40 -0.4 541,063 + CA264_02340 0.40 +0.0 541,097 - CA264_02340 0.43 +0.0 541,122 - CA264_02340 0.44 -0.0 541,151 + CA264_02340 0.46 +0.6 541,152 - CA264_02340 0.46 +0.0 541,152 - CA264_02340 0.46 -0.4 541,152 - CA264_02340 0.46 +0.3 541,161 - CA264_02340 0.47 -0.1 541,161 - CA264_02340 0.47 -0.7 541,368 + CA264_02340 0.61 -0.8 541,407 - CA264_02340 0.63 +0.4 541,407 - CA264_02340 0.63 +0.5 541,407 - CA264_02340 0.63 -1.8 541,553 - CA264_02340 0.73 +0.1 541,555 - CA264_02340 0.73 -0.7 541,571 + CA264_02340 0.74 +0.8 541,571 + CA264_02340 0.74 -0.2 541,572 - CA264_02340 0.74 +0.1 541,572 - CA264_02340 0.74 -0.5 541,573 + CA264_02340 0.74 -0.3 541,695 - CA264_02340 0.82 +0.4 541,814 + +0.6 541,846 - -0.7 541,874 + -0.3 541,875 - +0.4 541,883 + +0.4 541,884 - +0.1 542,030 - +0.1 542,030 - -0.2 542,030 - -0.5 542,035 - -0.4 542,092 + +0.6 542,095 + +0.3 542,096 - -0.2 542,096 - -0.4 542,098 - -0.1 542,098 - +0.8 542,098 - -0.2 542,098 - -1.6 542,119 - -0.9 542,127 + -0.4 542,149 - +0.7 542,149 - -0.3 542,149 - -0.0 542,151 + +1.0 542,151 + +0.5 542,281 + CA264_02345 0.54 +1.5 542,282 - CA264_02345 0.54 -0.7 542,306 + CA264_02345 0.62 +2.1 542,311 + CA264_02345 0.64 +0.8 542,312 - CA264_02345 0.64 -0.2 542,312 - CA264_02345 0.64 -0.3 542,314 + CA264_02345 0.65 +0.5 542,314 + CA264_02345 0.65 -0.5 542,314 + CA264_02345 0.65 -0.0 542,414 + -0.6 542,489 - -0.6 542,522 - +0.4 542,535 + +0.4 542,547 + -2.5 542,548 - -0.1 542,569 - +0.2 542,583 - +0.1 542,584 + -0.1 542,584 + +0.4 542,585 - -0.0 542,585 - -0.6 542,585 - -0.4 542,594 + CA264_02350 0.10 +0.6 542,594 + CA264_02350 0.10 -0.0 542,616 - CA264_02350 0.12 -0.6 542,617 + CA264_02350 0.12 -1.9 542,617 + CA264_02350 0.12 -0.9 542,618 - CA264_02350 0.12 -0.0 542,622 - CA264_02350 0.12 +0.2 542,660 + CA264_02350 0.15 +0.8 542,751 - CA264_02350 0.21 +0.4 542,752 + CA264_02350 0.21 -0.5 542,753 - CA264_02350 0.21 +0.4 542,786 - CA264_02350 0.23 -0.3 542,852 + CA264_02350 0.28 -1.7 542,853 - CA264_02350 0.28 -0.0 542,853 - CA264_02350 0.28 +1.4 542,854 + CA264_02350 0.28 +0.2 542,891 - CA264_02350 0.31 +0.1
Or see this region's nucleotide sequence