Experiment: m.b. Doxycycline hyclate 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_01425 and CA264_01430 are separated by 27 nucleotides CA264_01430 and CA264_01435 overlap by 23 nucleotides CA264_01435 and CA264_01440 are separated by 8 nucleotides
CA264_01425: CA264_01425 - RelA/SpoT family protein, at 338,996 to 341,188
_01425
CA264_01430: CA264_01430 - transcriptional repressor, at 341,216 to 341,710
_01430
CA264_01435: CA264_01435 - anti-anti-sigma factor, at 341,688 to 342,038
_01435
CA264_01440: CA264_01440 - adenylosuccinate synthase, at 342,047 to 343,330
_01440
Position (kb) 341
342 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 340.235 kb on - strand, within CA264_01425 at 340.235 kb on - strand, within CA264_01425 at 340.246 kb on + strand, within CA264_01425 at 340.318 kb on - strand, within CA264_01425 at 340.343 kb on + strand, within CA264_01425 at 340.344 kb on - strand, within CA264_01425 at 340.344 kb on - strand, within CA264_01425 at 340.345 kb on + strand, within CA264_01425 at 340.418 kb on + strand, within CA264_01425 at 340.418 kb on + strand, within CA264_01425 at 340.418 kb on + strand, within CA264_01425 at 340.450 kb on + strand, within CA264_01425 at 340.577 kb on - strand, within CA264_01425 at 340.601 kb on + strand, within CA264_01425 at 340.601 kb on + strand, within CA264_01425 at 340.625 kb on - strand, within CA264_01425 at 341.162 kb on - strand at 341.197 kb on + strand at 341.198 kb on - strand at 341.199 kb on + strand at 341.199 kb on + strand at 341.199 kb on + strand at 341.199 kb on + strand at 341.199 kb on + strand at 341.200 kb on - strand at 341.200 kb on - strand at 341.200 kb on - strand at 341.200 kb on - strand at 341.200 kb on - strand at 341.200 kb on - strand at 341.200 kb on - strand at 341.200 kb on - strand at 341.201 kb on + strand at 341.201 kb on + strand at 341.201 kb on + strand at 341.201 kb on + strand at 341.201 kb on + strand at 341.202 kb on - strand at 341.202 kb on - strand at 341.202 kb on - strand at 341.202 kb on - strand at 341.202 kb on - strand at 341.202 kb on - strand at 341.203 kb on + strand at 341.203 kb on + strand at 341.203 kb on + strand at 341.203 kb on + strand at 341.203 kb on + strand at 341.203 kb on + strand at 341.203 kb on + strand at 341.203 kb on + strand at 341.203 kb on + strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.204 kb on - strand at 341.208 kb on + strand at 341.209 kb on - strand at 341.210 kb on + strand at 341.210 kb on + strand at 341.211 kb on - strand at 341.214 kb on + strand at 341.214 kb on + strand at 341.215 kb on - strand at 341.224 kb on - strand at 341.224 kb on - strand at 341.231 kb on - strand at 341.231 kb on - strand at 341.327 kb on + strand, within CA264_01430 at 341.411 kb on + strand, within CA264_01430 at 341.411 kb on + strand, within CA264_01430 at 341.576 kb on - strand, within CA264_01430 at 341.576 kb on - strand, within CA264_01430 at 341.634 kb on + strand, within CA264_01430 at 341.634 kb on + strand, within CA264_01430 at 341.635 kb on - strand, within CA264_01430 at 341.694 kb on + strand at 341.708 kb on + strand at 341.709 kb on - strand at 341.796 kb on + strand, within CA264_01435 at 341.797 kb on - strand, within CA264_01435 at 341.835 kb on - strand, within CA264_01435 at 341.924 kb on + strand, within CA264_01435 at 341.959 kb on + strand, within CA264_01435
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml remove 340,235 - CA264_01425 0.56 -0.8 340,235 - CA264_01425 0.56 -1.4 340,246 + CA264_01425 0.57 -0.3 340,318 - CA264_01425 0.60 -0.9 340,343 + CA264_01425 0.61 -0.4 340,344 - CA264_01425 0.61 +1.6 340,344 - CA264_01425 0.61 -0.7 340,345 + CA264_01425 0.62 +0.4 340,418 + CA264_01425 0.65 +1.4 340,418 + CA264_01425 0.65 +0.0 340,418 + CA264_01425 0.65 -1.3 340,450 + CA264_01425 0.66 -0.2 340,577 - CA264_01425 0.72 +0.2 340,601 + CA264_01425 0.73 -0.4 340,601 + CA264_01425 0.73 -0.5 340,625 - CA264_01425 0.74 +0.4 341,162 - +0.3 341,197 + +1.4 341,198 - -1.5 341,199 + +1.3 341,199 + -0.8 341,199 + -0.5 341,199 + +1.0 341,199 + +2.0 341,200 - -1.2 341,200 - +0.5 341,200 - -0.5 341,200 - -0.1 341,200 - +1.3 341,200 - -0.7 341,200 - +0.2 341,200 - +0.4 341,201 + +0.1 341,201 + -0.3 341,201 + -0.2 341,201 + +0.0 341,201 + +0.5 341,202 - -0.1 341,202 - +0.0 341,202 - +0.2 341,202 - +0.5 341,202 - -0.7 341,202 - +0.3 341,203 + -0.2 341,203 + +0.3 341,203 + +0.3 341,203 + -2.1 341,203 + -0.7 341,203 + -0.8 341,203 + -0.1 341,203 + +0.2 341,203 + +0.3 341,204 - -0.0 341,204 - +0.4 341,204 - +0.2 341,204 - -0.3 341,204 - +0.4 341,204 - +1.0 341,204 - +0.5 341,204 - +0.8 341,204 - -0.1 341,204 - -0.2 341,204 - +0.8 341,208 + +0.0 341,209 - -0.2 341,210 + -0.6 341,210 + -0.4 341,211 - -0.1 341,214 + -0.0 341,214 + -0.3 341,215 - -0.3 341,224 - -0.2 341,224 - +0.0 341,231 - +0.1 341,231 - -1.8 341,327 + CA264_01430 0.22 -3.4 341,411 + CA264_01430 0.39 -3.3 341,411 + CA264_01430 0.39 -3.5 341,576 - CA264_01430 0.73 -2.0 341,576 - CA264_01430 0.73 -1.4 341,634 + CA264_01430 0.84 -1.3 341,634 + CA264_01430 0.84 -4.1 341,635 - CA264_01430 0.85 -1.8 341,694 + -0.5 341,708 + -0.4 341,709 - -0.1 341,796 + CA264_01435 0.31 +0.1 341,797 - CA264_01435 0.31 -0.3 341,835 - CA264_01435 0.42 +0.1 341,924 + CA264_01435 0.67 -0.5 341,959 + CA264_01435 0.77 +0.4
Or see this region's nucleotide sequence