Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00205

Experiment: m.b. Doxycycline hyclate 0.004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_00195 and CA264_00200 are separated by 41 nucleotidesCA264_00200 and CA264_00205 are separated by 43 nucleotidesCA264_00205 and CA264_00210 are separated by 327 nucleotides CA264_00195: CA264_00195 - ribonuclease HII, at 50,985 to 51,584 _00195 CA264_00200: CA264_00200 - response regulator, at 51,626 to 52,060 _00200 CA264_00205: CA264_00205 - histidine kinase, at 52,104 to 53,585 _00205 CA264_00210: CA264_00210 - glycine cleavage system protein T, at 53,913 to 55,001 _00210 Position (kb) 52 53 54Strain fitness (log2 ratio) -1 0 1at 51.113 kb on - strand, within CA264_00195at 51.227 kb on + strand, within CA264_00195at 51.228 kb on - strand, within CA264_00195at 51.235 kb on + strand, within CA264_00195at 51.235 kb on + strand, within CA264_00195at 51.235 kb on + strand, within CA264_00195at 51.236 kb on - strand, within CA264_00195at 51.295 kb on - strand, within CA264_00195at 51.373 kb on - strand, within CA264_00195at 51.373 kb on - strand, within CA264_00195at 51.457 kb on - strand, within CA264_00195at 51.694 kb on + strand, within CA264_00200at 51.796 kb on + strand, within CA264_00200at 51.862 kb on + strand, within CA264_00200at 51.863 kb on - strand, within CA264_00200at 51.897 kb on - strand, within CA264_00200at 51.957 kb on + strand, within CA264_00200at 52.040 kb on - strandat 52.062 kb on - strandat 52.064 kb on - strandat 52.064 kb on - strandat 52.064 kb on - strandat 52.283 kb on + strand, within CA264_00205at 52.284 kb on - strand, within CA264_00205at 52.397 kb on - strand, within CA264_00205at 52.400 kb on + strand, within CA264_00205at 52.401 kb on - strand, within CA264_00205at 52.401 kb on - strand, within CA264_00205at 52.444 kb on - strand, within CA264_00205at 52.444 kb on - strand, within CA264_00205at 52.446 kb on - strand, within CA264_00205at 52.467 kb on + strand, within CA264_00205at 52.651 kb on + strand, within CA264_00205at 52.651 kb on + strand, within CA264_00205at 52.652 kb on - strand, within CA264_00205at 52.696 kb on - strand, within CA264_00205at 52.696 kb on - strand, within CA264_00205at 52.786 kb on - strand, within CA264_00205at 52.814 kb on + strand, within CA264_00205at 52.814 kb on + strand, within CA264_00205at 52.932 kb on + strand, within CA264_00205at 52.933 kb on - strand, within CA264_00205at 52.958 kb on + strand, within CA264_00205at 52.958 kb on + strand, within CA264_00205at 52.959 kb on - strand, within CA264_00205at 52.959 kb on - strand, within CA264_00205at 52.963 kb on + strand, within CA264_00205at 52.964 kb on - strand, within CA264_00205at 52.964 kb on - strand, within CA264_00205at 52.964 kb on - strand, within CA264_00205at 52.966 kb on + strand, within CA264_00205at 52.966 kb on + strand, within CA264_00205at 53.034 kb on + strand, within CA264_00205at 53.035 kb on - strand, within CA264_00205at 53.036 kb on + strand, within CA264_00205at 53.036 kb on + strand, within CA264_00205at 53.036 kb on + strand, within CA264_00205at 53.036 kb on + strand, within CA264_00205at 53.045 kb on + strand, within CA264_00205at 53.182 kb on - strand, within CA264_00205at 53.227 kb on + strand, within CA264_00205at 53.227 kb on + strand, within CA264_00205at 53.354 kb on - strand, within CA264_00205at 53.423 kb on + strand, within CA264_00205at 53.423 kb on + strand, within CA264_00205at 53.454 kb on + strandat 53.589 kb on + strandat 53.589 kb on + strandat 53.605 kb on - strandat 53.643 kb on + strandat 53.643 kb on + strandat 53.644 kb on - strandat 53.646 kb on - strandat 53.646 kb on - strandat 53.681 kb on + strandat 53.738 kb on - strandat 53.743 kb on + strandat 53.743 kb on + strandat 53.743 kb on + strandat 53.743 kb on + strandat 53.744 kb on - strandat 53.744 kb on - strandat 53.744 kb on - strandat 53.744 kb on - strandat 53.744 kb on - strandat 53.763 kb on + strandat 53.763 kb on + strandat 53.763 kb on + strandat 53.764 kb on - strandat 53.764 kb on - strandat 53.771 kb on - strandat 53.787 kb on - strandat 53.787 kb on - strandat 53.787 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Doxycycline hyclate 0.004 mg/ml
remove
51,113 - CA264_00195 0.21 +0.0
51,227 + CA264_00195 0.40 -0.3
51,228 - CA264_00195 0.41 +0.3
51,235 + CA264_00195 0.42 +0.7
51,235 + CA264_00195 0.42 -0.2
51,235 + CA264_00195 0.42 +0.1
51,236 - CA264_00195 0.42 -0.4
51,295 - CA264_00195 0.52 +0.9
51,373 - CA264_00195 0.65 -0.1
51,373 - CA264_00195 0.65 +0.6
51,457 - CA264_00195 0.79 -1.4
51,694 + CA264_00200 0.16 -0.1
51,796 + CA264_00200 0.39 -0.9
51,862 + CA264_00200 0.54 -1.0
51,863 - CA264_00200 0.54 -0.6
51,897 - CA264_00200 0.62 -0.2
51,957 + CA264_00200 0.76 -0.3
52,040 - -0.3
52,062 - -0.1
52,064 - +0.9
52,064 - -0.1
52,064 - +1.0
52,283 + CA264_00205 0.12 +0.4
52,284 - CA264_00205 0.12 +0.6
52,397 - CA264_00205 0.20 -1.6
52,400 + CA264_00205 0.20 -1.6
52,401 - CA264_00205 0.20 +0.2
52,401 - CA264_00205 0.20 -0.0
52,444 - CA264_00205 0.23 +1.4
52,444 - CA264_00205 0.23 -0.1
52,446 - CA264_00205 0.23 +0.8
52,467 + CA264_00205 0.24 +1.2
52,651 + CA264_00205 0.37 +0.6
52,651 + CA264_00205 0.37 +1.1
52,652 - CA264_00205 0.37 +1.0
52,696 - CA264_00205 0.40 -0.2
52,696 - CA264_00205 0.40 -0.2
52,786 - CA264_00205 0.46 -1.1
52,814 + CA264_00205 0.48 -0.3
52,814 + CA264_00205 0.48 -0.1
52,932 + CA264_00205 0.56 +0.2
52,933 - CA264_00205 0.56 -0.0
52,958 + CA264_00205 0.58 -0.1
52,958 + CA264_00205 0.58 +0.4
52,959 - CA264_00205 0.58 +0.9
52,959 - CA264_00205 0.58 +0.0
52,963 + CA264_00205 0.58 +0.1
52,964 - CA264_00205 0.58 +1.4
52,964 - CA264_00205 0.58 +0.3
52,964 - CA264_00205 0.58 -0.3
52,966 + CA264_00205 0.58 -0.2
52,966 + CA264_00205 0.58 +0.0
53,034 + CA264_00205 0.63 +0.4
53,035 - CA264_00205 0.63 -0.1
53,036 + CA264_00205 0.63 -0.2
53,036 + CA264_00205 0.63 +0.8
53,036 + CA264_00205 0.63 +0.3
53,036 + CA264_00205 0.63 -0.3
53,045 + CA264_00205 0.63 -0.4
53,182 - CA264_00205 0.73 +0.1
53,227 + CA264_00205 0.76 +0.5
53,227 + CA264_00205 0.76 -0.3
53,354 - CA264_00205 0.84 +1.3
53,423 + CA264_00205 0.89 -0.4
53,423 + CA264_00205 0.89 +0.0
53,454 + -0.1
53,589 + -0.7
53,589 + -0.0
53,605 - -0.2
53,643 + -0.5
53,643 + +0.6
53,644 - +0.8
53,646 - -0.3
53,646 - -0.0
53,681 + +0.2
53,738 - +0.7
53,743 + +0.0
53,743 + -0.2
53,743 + -0.2
53,743 + -0.3
53,744 - +0.3
53,744 - +0.3
53,744 - -0.0
53,744 - +0.8
53,744 - -0.8
53,763 + +0.3
53,763 + -1.1
53,763 + -0.5
53,764 - +1.1
53,764 - -0.9
53,771 - +0.5
53,787 - +0.5
53,787 - -0.4
53,787 - -0.2

Or see this region's nucleotide sequence