Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4837

Experiment: Bacitracin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4836 and PfGW456L13_4837 are separated by 123 nucleotidesPfGW456L13_4837 and PfGW456L13_4838 are separated by 49 nucleotidesPfGW456L13_4838 and PfGW456L13_4839 are separated by 172 nucleotides PfGW456L13_4836 - Transglycosylase, Slt family, at 5,403,507 to 5,404,967 _4836 PfGW456L13_4837 - Pyridoxine 5'-phosphate synthase (EC 2.6.99.2), at 5,405,091 to 5,405,837 _4837 PfGW456L13_4838 - DNA recombination and repair protein RecO, at 5,405,887 to 5,406,570 _4838 PfGW456L13_4839 - GTP-binding protein Era, at 5,406,743 to 5,407,645 _4839 Position (kb) 5405 5406Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 5404.137 kb on + strand, within PfGW456L13_4836at 5404.137 kb on + strand, within PfGW456L13_4836at 5404.137 kb on + strand, within PfGW456L13_4836at 5404.138 kb on - strandat 5404.138 kb on - strand, within PfGW456L13_4836at 5404.138 kb on - strand, within PfGW456L13_4836at 5404.138 kb on - strand, within PfGW456L13_4836at 5404.138 kb on - strand, within PfGW456L13_4836at 5404.243 kb on - strand, within PfGW456L13_4836at 5404.293 kb on + strand, within PfGW456L13_4836at 5404.296 kb on + strand, within PfGW456L13_4836at 5404.297 kb on - strand, within PfGW456L13_4836at 5404.321 kb on - strand, within PfGW456L13_4836at 5404.371 kb on + strand, within PfGW456L13_4836at 5404.371 kb on + strand, within PfGW456L13_4836at 5404.371 kb on + strand, within PfGW456L13_4836at 5404.372 kb on - strand, within PfGW456L13_4836at 5404.581 kb on + strand, within PfGW456L13_4836at 5404.581 kb on + strand, within PfGW456L13_4836at 5404.581 kb on + strand, within PfGW456L13_4836at 5404.582 kb on - strand, within PfGW456L13_4836at 5404.591 kb on - strand, within PfGW456L13_4836at 5404.591 kb on - strand, within PfGW456L13_4836at 5404.591 kb on - strand, within PfGW456L13_4836at 5404.591 kb on - strand, within PfGW456L13_4836at 5404.591 kb on - strand, within PfGW456L13_4836at 5404.591 kb on - strand, within PfGW456L13_4836at 5404.657 kb on - strand, within PfGW456L13_4836at 5404.657 kb on - strand, within PfGW456L13_4836at 5404.738 kb on + strand, within PfGW456L13_4836at 5404.738 kb on + strand, within PfGW456L13_4836at 5404.738 kb on + strand, within PfGW456L13_4836at 5404.777 kb on - strand, within PfGW456L13_4836at 5404.777 kb on - strand, within PfGW456L13_4836at 5404.848 kb on + strandat 5404.848 kb on + strandat 5404.848 kb on + strandat 5404.848 kb on + strandat 5405.092 kb on + strandat 5405.092 kb on + strandat 5405.092 kb on + strandat 5405.093 kb on - strandat 5405.093 kb on - strandat 5405.820 kb on - strandat 5405.877 kb on + strandat 5405.877 kb on + strandat 5405.877 kb on + strandat 5405.877 kb on + strandat 5405.877 kb on + strandat 5405.877 kb on + strandat 5405.878 kb on - strandat 5405.878 kb on - strandat 5405.878 kb on - strandat 5405.878 kb on - strandat 5405.878 kb on - strandat 5406.057 kb on - strand, within PfGW456L13_4838at 5406.126 kb on + strand, within PfGW456L13_4838at 5406.126 kb on + strand, within PfGW456L13_4838at 5406.127 kb on - strand, within PfGW456L13_4838at 5406.239 kb on + strand, within PfGW456L13_4838at 5406.240 kb on - strand, within PfGW456L13_4838at 5406.250 kb on + strand, within PfGW456L13_4838at 5406.250 kb on + strand, within PfGW456L13_4838at 5406.305 kb on + strand, within PfGW456L13_4838at 5406.305 kb on + strand, within PfGW456L13_4838at 5406.306 kb on - strand, within PfGW456L13_4838at 5406.306 kb on - strand, within PfGW456L13_4838at 5406.542 kb on + strandat 5406.542 kb on + strandat 5406.543 kb on - strandat 5406.543 kb on - strandat 5406.543 kb on - strandat 5406.605 kb on + strandat 5406.606 kb on - strandat 5406.606 kb on - strandat 5406.606 kb on - strandat 5406.606 kb on - strandat 5406.609 kb on + strandat 5406.609 kb on + strandat 5406.609 kb on + strandat 5406.609 kb on + strandat 5406.609 kb on + strandat 5406.610 kb on - strandat 5406.610 kb on - strandat 5406.610 kb on - strandat 5406.659 kb on + strandat 5406.669 kb on + strandat 5406.669 kb on + strandat 5406.669 kb on + strandat 5406.669 kb on + strandat 5406.670 kb on - strandat 5406.670 kb on - strandat 5406.670 kb on - strandat 5406.741 kb on + strandat 5406.741 kb on + strandat 5406.741 kb on + strandat 5406.741 kb on + strandat 5406.744 kb on + strandat 5406.744 kb on + strandat 5406.744 kb on + strandat 5406.744 kb on + strandat 5406.744 kb on + strandat 5406.745 kb on - strandat 5406.745 kb on - strandat 5406.745 kb on - strandat 5406.745 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.5 mg/ml
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5,404,137 + PfGW456L13_4836 0.43 -0.8
5,404,137 + PfGW456L13_4836 0.43 -0.5
5,404,137 + PfGW456L13_4836 0.43 -4.2
5,404,138 - -0.2
5,404,138 - PfGW456L13_4836 0.43 -3.0
5,404,138 - PfGW456L13_4836 0.43 -3.4
5,404,138 - PfGW456L13_4836 0.43 -2.8
5,404,138 - PfGW456L13_4836 0.43 -2.1
5,404,243 - PfGW456L13_4836 0.50 -3.0
5,404,293 + PfGW456L13_4836 0.54 -1.7
5,404,296 + PfGW456L13_4836 0.54 -4.9
5,404,297 - PfGW456L13_4836 0.54 -3.0
5,404,321 - PfGW456L13_4836 0.56 -1.5
5,404,371 + PfGW456L13_4836 0.59 -3.0
5,404,371 + PfGW456L13_4836 0.59 -2.8
5,404,371 + PfGW456L13_4836 0.59 -1.0
5,404,372 - PfGW456L13_4836 0.59 -0.2
5,404,581 + PfGW456L13_4836 0.74 -1.2
5,404,581 + PfGW456L13_4836 0.74 -0.2
5,404,581 + PfGW456L13_4836 0.74 -1.8
5,404,582 - PfGW456L13_4836 0.74 -2.3
5,404,591 - PfGW456L13_4836 0.74 -2.5
5,404,591 - PfGW456L13_4836 0.74 -2.3
5,404,591 - PfGW456L13_4836 0.74 -0.9
5,404,591 - PfGW456L13_4836 0.74 -2.2
5,404,591 - PfGW456L13_4836 0.74 +0.1
5,404,591 - PfGW456L13_4836 0.74 -0.0
5,404,657 - PfGW456L13_4836 0.79 -1.2
5,404,657 - PfGW456L13_4836 0.79 -2.2
5,404,738 + PfGW456L13_4836 0.84 -1.4
5,404,738 + PfGW456L13_4836 0.84 -1.8
5,404,738 + PfGW456L13_4836 0.84 -1.2
5,404,777 - PfGW456L13_4836 0.87 -1.5
5,404,777 - PfGW456L13_4836 0.87 -2.3
5,404,848 + -1.8
5,404,848 + -0.2
5,404,848 + -1.9
5,404,848 + -3.1
5,405,092 + -0.9
5,405,092 + -0.0
5,405,092 + -0.8
5,405,093 - -0.9
5,405,093 - +0.2
5,405,820 - -0.6
5,405,877 + -1.7
5,405,877 + +0.5
5,405,877 + -0.4
5,405,877 + -1.2
5,405,877 + +0.2
5,405,877 + -1.0
5,405,878 - -0.5
5,405,878 - -0.8
5,405,878 - +0.2
5,405,878 - +0.2
5,405,878 - -0.0
5,406,057 - PfGW456L13_4838 0.25 +1.0
5,406,126 + PfGW456L13_4838 0.35 -0.7
5,406,126 + PfGW456L13_4838 0.35 -0.5
5,406,127 - PfGW456L13_4838 0.35 -0.2
5,406,239 + PfGW456L13_4838 0.51 -0.9
5,406,240 - PfGW456L13_4838 0.52 +0.3
5,406,250 + PfGW456L13_4838 0.53 -1.8
5,406,250 + PfGW456L13_4838 0.53 -0.7
5,406,305 + PfGW456L13_4838 0.61 -0.5
5,406,305 + PfGW456L13_4838 0.61 -0.4
5,406,306 - PfGW456L13_4838 0.61 +0.1
5,406,306 - PfGW456L13_4838 0.61 -1.0
5,406,542 + +0.2
5,406,542 + -1.2
5,406,543 - -0.4
5,406,543 - +1.4
5,406,543 - -0.4
5,406,605 + -1.1
5,406,606 - +1.2
5,406,606 - +0.9
5,406,606 - +0.1
5,406,606 - -0.9
5,406,609 + -0.0
5,406,609 + -0.6
5,406,609 + -0.8
5,406,609 + -0.0
5,406,609 + +0.4
5,406,610 - -0.2
5,406,610 - -0.2
5,406,610 - -0.1
5,406,659 + -0.2
5,406,669 + +0.3
5,406,669 + -0.2
5,406,669 + +0.6
5,406,669 + -1.3
5,406,670 - +1.3
5,406,670 - -0.8
5,406,670 - -0.2
5,406,741 + -0.2
5,406,741 + +0.2
5,406,741 + +0.3
5,406,741 + +1.1
5,406,744 + -1.1
5,406,744 + +0.2
5,406,744 + -1.0
5,406,744 + +0.3
5,406,744 + -1.2
5,406,745 - +0.8
5,406,745 - -0.2
5,406,745 - -0.9
5,406,745 - -1.4

Or see this region's nucleotide sequence