Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4434

Experiment: Bacitracin 0.5 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_4432 and PfGW456L13_4433 are separated by 144 nucleotidesPfGW456L13_4433 and PfGW456L13_4434 are separated by 5 nucleotidesPfGW456L13_4434 and PfGW456L13_4435 are separated by 348 nucleotides PfGW456L13_4432 - HlyD family secretion protein, at 4,955,320 to 4,956,675 _4432 PfGW456L13_4433 - FIG00955751: hypothetical protein, at 4,956,820 to 4,957,416 _4433 PfGW456L13_4434 - Transcriptional regulator GbuR, at 4,957,422 to 4,958,315 _4434 PfGW456L13_4435 - Agmatinase (EC 3.5.3.11), at 4,958,664 to 4,959,614 _4435 Position (kb) 4957 4958 4959Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4956.422 kb on - strand, within PfGW456L13_4432at 4956.422 kb on - strand, within PfGW456L13_4432at 4956.431 kb on - strand, within PfGW456L13_4432at 4956.502 kb on + strandat 4956.503 kb on - strand, within PfGW456L13_4432at 4956.595 kb on - strandat 4956.595 kb on - strandat 4956.595 kb on - strandat 4956.595 kb on - strandat 4956.598 kb on - strandat 4956.622 kb on + strandat 4956.623 kb on - strandat 4956.674 kb on - strandat 4956.681 kb on - strandat 4956.748 kb on + strandat 4956.749 kb on - strandat 4956.837 kb on + strandat 4956.837 kb on + strandat 4956.837 kb on + strandat 4956.837 kb on + strandat 4956.837 kb on + strandat 4956.838 kb on - strandat 4956.838 kb on - strandat 4956.838 kb on - strandat 4956.838 kb on - strandat 4957.096 kb on - strand, within PfGW456L13_4433at 4957.327 kb on + strand, within PfGW456L13_4433at 4957.423 kb on + strandat 4957.424 kb on - strandat 4957.445 kb on + strandat 4957.445 kb on + strandat 4957.523 kb on - strand, within PfGW456L13_4434at 4957.582 kb on + strand, within PfGW456L13_4434at 4957.583 kb on - strand, within PfGW456L13_4434at 4957.583 kb on - strand, within PfGW456L13_4434at 4957.606 kb on + strand, within PfGW456L13_4434at 4957.607 kb on - strand, within PfGW456L13_4434at 4957.643 kb on + strand, within PfGW456L13_4434at 4957.644 kb on - strand, within PfGW456L13_4434at 4957.644 kb on - strand, within PfGW456L13_4434at 4957.789 kb on + strand, within PfGW456L13_4434at 4957.789 kb on + strand, within PfGW456L13_4434at 4957.789 kb on + strand, within PfGW456L13_4434at 4957.789 kb on + strand, within PfGW456L13_4434at 4957.789 kb on + strand, within PfGW456L13_4434at 4957.789 kb on + strand, within PfGW456L13_4434at 4957.790 kb on - strand, within PfGW456L13_4434at 4957.790 kb on - strand, within PfGW456L13_4434at 4957.790 kb on - strand, within PfGW456L13_4434at 4957.822 kb on + strand, within PfGW456L13_4434at 4957.822 kb on + strand, within PfGW456L13_4434at 4957.822 kb on + strand, within PfGW456L13_4434at 4957.823 kb on - strand, within PfGW456L13_4434at 4957.823 kb on - strand, within PfGW456L13_4434at 4957.823 kb on - strand, within PfGW456L13_4434at 4957.823 kb on - strand, within PfGW456L13_4434at 4957.823 kb on - strand, within PfGW456L13_4434at 4957.823 kb on - strand, within PfGW456L13_4434at 4957.954 kb on + strand, within PfGW456L13_4434at 4957.955 kb on - strand, within PfGW456L13_4434at 4958.059 kb on + strand, within PfGW456L13_4434at 4958.060 kb on - strand, within PfGW456L13_4434at 4958.126 kb on + strand, within PfGW456L13_4434at 4958.126 kb on + strandat 4958.127 kb on - strand, within PfGW456L13_4434at 4958.127 kb on - strand, within PfGW456L13_4434at 4958.197 kb on + strand, within PfGW456L13_4434at 4958.197 kb on + strand, within PfGW456L13_4434at 4958.197 kb on + strand, within PfGW456L13_4434at 4958.197 kb on + strand, within PfGW456L13_4434at 4958.197 kb on + strand, within PfGW456L13_4434at 4958.197 kb on + strand, within PfGW456L13_4434at 4958.197 kb on + strand, within PfGW456L13_4434at 4958.198 kb on - strand, within PfGW456L13_4434at 4958.198 kb on - strand, within PfGW456L13_4434at 4958.198 kb on - strand, within PfGW456L13_4434at 4958.198 kb on - strand, within PfGW456L13_4434at 4958.286 kb on + strandat 4958.287 kb on - strandat 4958.287 kb on - strandat 4958.287 kb on - strandat 4958.287 kb on - strandat 4958.543 kb on + strandat 4958.543 kb on + strandat 4958.573 kb on + strandat 4958.574 kb on - strandat 4958.574 kb on - strandat 4958.633 kb on + strandat 4958.633 kb on + strandat 4958.637 kb on + strandat 4958.637 kb on + strandat 4958.638 kb on - strandat 4958.638 kb on - strandat 4958.638 kb on - strandat 4958.638 kb on - strandat 4958.638 kb on - strandat 4958.782 kb on + strand, within PfGW456L13_4435at 4959.074 kb on + strand, within PfGW456L13_4435at 4959.074 kb on + strand, within PfGW456L13_4435at 4959.075 kb on - strand, within PfGW456L13_4435at 4959.240 kb on + strand, within PfGW456L13_4435at 4959.241 kb on - strand, within PfGW456L13_4435at 4959.241 kb on - strand, within PfGW456L13_4435

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.5 mg/ml
remove
4,956,422 - PfGW456L13_4432 0.81 -0.7
4,956,422 - PfGW456L13_4432 0.81 -2.1
4,956,431 - PfGW456L13_4432 0.82 -0.2
4,956,502 + +0.7
4,956,503 - PfGW456L13_4432 0.87 +0.0
4,956,595 - -0.5
4,956,595 - -0.1
4,956,595 - -0.2
4,956,595 - -0.4
4,956,598 - +0.0
4,956,622 + -0.3
4,956,623 - -0.6
4,956,674 - +1.5
4,956,681 - -0.1
4,956,748 + -0.1
4,956,749 - +0.2
4,956,837 + +0.0
4,956,837 + -0.9
4,956,837 + -0.3
4,956,837 + -0.5
4,956,837 + -0.7
4,956,838 - +0.3
4,956,838 - -0.0
4,956,838 - -0.7
4,956,838 - -0.7
4,957,096 - PfGW456L13_4433 0.46 -1.1
4,957,327 + PfGW456L13_4433 0.85 -0.6
4,957,423 + +0.7
4,957,424 - -2.8
4,957,445 + +2.3
4,957,445 + -2.9
4,957,523 - PfGW456L13_4434 0.11 +0.9
4,957,582 + PfGW456L13_4434 0.18 +0.9
4,957,583 - PfGW456L13_4434 0.18 -0.2
4,957,583 - PfGW456L13_4434 0.18 -0.6
4,957,606 + PfGW456L13_4434 0.21 +0.4
4,957,607 - PfGW456L13_4434 0.21 +0.2
4,957,643 + PfGW456L13_4434 0.25 +0.3
4,957,644 - PfGW456L13_4434 0.25 -0.8
4,957,644 - PfGW456L13_4434 0.25 +0.2
4,957,789 + PfGW456L13_4434 0.41 +0.4
4,957,789 + PfGW456L13_4434 0.41 -0.0
4,957,789 + PfGW456L13_4434 0.41 +1.1
4,957,789 + PfGW456L13_4434 0.41 -0.5
4,957,789 + PfGW456L13_4434 0.41 +1.0
4,957,789 + PfGW456L13_4434 0.41 +0.0
4,957,790 - PfGW456L13_4434 0.41 +0.8
4,957,790 - PfGW456L13_4434 0.41 +0.1
4,957,790 - PfGW456L13_4434 0.41 -1.5
4,957,822 + PfGW456L13_4434 0.45 +0.2
4,957,822 + PfGW456L13_4434 0.45 -1.2
4,957,822 + PfGW456L13_4434 0.45 +1.7
4,957,823 - PfGW456L13_4434 0.45 -1.4
4,957,823 - PfGW456L13_4434 0.45 +0.2
4,957,823 - PfGW456L13_4434 0.45 -0.3
4,957,823 - PfGW456L13_4434 0.45 +1.6
4,957,823 - PfGW456L13_4434 0.45 +0.1
4,957,823 - PfGW456L13_4434 0.45 +2.3
4,957,954 + PfGW456L13_4434 0.60 +0.8
4,957,955 - PfGW456L13_4434 0.60 +0.7
4,958,059 + PfGW456L13_4434 0.71 -0.4
4,958,060 - PfGW456L13_4434 0.71 -0.3
4,958,126 + PfGW456L13_4434 0.79 +0.7
4,958,126 + -0.3
4,958,127 - PfGW456L13_4434 0.79 +2.0
4,958,127 - PfGW456L13_4434 0.79 -0.8
4,958,197 + PfGW456L13_4434 0.87 +0.1
4,958,197 + PfGW456L13_4434 0.87 +1.6
4,958,197 + PfGW456L13_4434 0.87 +0.7
4,958,197 + PfGW456L13_4434 0.87 +0.0
4,958,197 + PfGW456L13_4434 0.87 -0.1
4,958,197 + PfGW456L13_4434 0.87 -0.2
4,958,197 + PfGW456L13_4434 0.87 -0.0
4,958,198 - PfGW456L13_4434 0.87 -0.7
4,958,198 - PfGW456L13_4434 0.87 -0.1
4,958,198 - PfGW456L13_4434 0.87 -0.2
4,958,198 - PfGW456L13_4434 0.87 -0.1
4,958,286 + +1.4
4,958,287 - -2.4
4,958,287 - -0.0
4,958,287 - -0.1
4,958,287 - +0.5
4,958,543 + +0.7
4,958,543 + -0.7
4,958,573 + -1.7
4,958,574 - -0.2
4,958,574 - +0.6
4,958,633 + -0.2
4,958,633 + -1.0
4,958,637 + +0.7
4,958,637 + +0.5
4,958,638 - -0.5
4,958,638 - -0.7
4,958,638 - +1.1
4,958,638 - -1.3
4,958,638 - -0.3
4,958,782 + PfGW456L13_4435 0.12 +0.3
4,959,074 + PfGW456L13_4435 0.43 +0.0
4,959,074 + PfGW456L13_4435 0.43 +0.3
4,959,075 - PfGW456L13_4435 0.43 -1.1
4,959,240 + PfGW456L13_4435 0.61 -0.3
4,959,241 - PfGW456L13_4435 0.61 -0.2
4,959,241 - PfGW456L13_4435 0.61 -0.4

Or see this region's nucleotide sequence