Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_267

Experiment: Bacitracin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_266 and PfGW456L13_267 are separated by 8 nucleotidesPfGW456L13_267 and PfGW456L13_268 are separated by 4 nucleotidesPfGW456L13_268 and PfGW456L13_269 are separated by 62 nucleotides PfGW456L13_266 - General secretion pathway protein D, at 308,776 to 310,695 _266 PfGW456L13_267 - hypothetical protein, at 310,704 to 311,246 _267 PfGW456L13_268 - Cytochrome B561, at 311,251 to 311,814 _268 PfGW456L13_269 - Chitin binding protein, at 311,877 to 313,343 _269 Position (kb) 310 311 312Strain fitness (log2 ratio) -2 -1 0 1at 309.930 kb on + strand, within PfGW456L13_266at 310.024 kb on + strand, within PfGW456L13_266at 310.024 kb on + strand, within PfGW456L13_266at 310.024 kb on + strand, within PfGW456L13_266at 310.168 kb on - strand, within PfGW456L13_266at 310.168 kb on - strand, within PfGW456L13_266at 310.168 kb on - strand, within PfGW456L13_266at 310.226 kb on + strand, within PfGW456L13_266at 310.226 kb on + strand, within PfGW456L13_266at 310.227 kb on - strand, within PfGW456L13_266at 310.227 kb on - strand, within PfGW456L13_266at 310.227 kb on - strand, within PfGW456L13_266at 310.333 kb on + strand, within PfGW456L13_266at 310.410 kb on + strand, within PfGW456L13_266at 310.411 kb on - strand, within PfGW456L13_266at 310.436 kb on + strand, within PfGW456L13_266at 310.436 kb on + strand, within PfGW456L13_266at 310.689 kb on + strandat 310.689 kb on + strandat 310.689 kb on + strandat 310.689 kb on + strandat 310.689 kb on + strandat 310.689 kb on + strandat 310.689 kb on + strandat 310.690 kb on - strandat 310.690 kb on - strandat 310.690 kb on - strandat 310.912 kb on + strand, within PfGW456L13_267at 310.912 kb on + strand, within PfGW456L13_267at 310.913 kb on - strand, within PfGW456L13_267at 311.164 kb on + strand, within PfGW456L13_267at 311.383 kb on + strand, within PfGW456L13_268at 311.383 kb on + strand, within PfGW456L13_268at 311.383 kb on + strand, within PfGW456L13_268at 311.383 kb on + strand, within PfGW456L13_268at 311.383 kb on + strand, within PfGW456L13_268at 311.383 kb on + strand, within PfGW456L13_268at 311.384 kb on - strand, within PfGW456L13_268at 311.384 kb on - strand, within PfGW456L13_268at 311.384 kb on - strand, within PfGW456L13_268at 311.384 kb on - strand, within PfGW456L13_268at 311.384 kb on - strand, within PfGW456L13_268at 311.461 kb on + strand, within PfGW456L13_268at 311.461 kb on + strand, within PfGW456L13_268at 311.462 kb on - strand, within PfGW456L13_268at 311.462 kb on - strand, within PfGW456L13_268at 311.522 kb on + strand, within PfGW456L13_268at 311.523 kb on - strand, within PfGW456L13_268at 311.523 kb on - strand, within PfGW456L13_268at 311.523 kb on - strand, within PfGW456L13_268at 311.592 kb on + strand, within PfGW456L13_268at 311.624 kb on + strand, within PfGW456L13_268at 311.625 kb on - strand, within PfGW456L13_268at 311.826 kb on + strandat 311.827 kb on - strandat 311.865 kb on + strandat 311.865 kb on + strandat 311.865 kb on + strandat 311.865 kb on + strandat 311.865 kb on + strandat 311.866 kb on - strandat 311.866 kb on - strandat 311.866 kb on - strandat 311.866 kb on - strandat 311.866 kb on - strandat 311.878 kb on + strandat 311.878 kb on + strandat 311.878 kb on + strandat 311.878 kb on + strandat 311.879 kb on - strandat 311.879 kb on - strandat 311.879 kb on - strandat 311.879 kb on - strandat 311.879 kb on - strandat 311.879 kb on - strandat 311.879 kb on - strandat 311.879 kb on - strandat 311.948 kb on - strandat 312.034 kb on + strand, within PfGW456L13_269at 312.067 kb on + strand, within PfGW456L13_269at 312.183 kb on + strand, within PfGW456L13_269at 312.183 kb on + strand, within PfGW456L13_269at 312.183 kb on + strand, within PfGW456L13_269at 312.183 kb on + strand, within PfGW456L13_269at 312.183 kb on + strand, within PfGW456L13_269at 312.183 kb on + strand, within PfGW456L13_269at 312.183 kb on + strand, within PfGW456L13_269at 312.183 kb on + strand, within PfGW456L13_269at 312.184 kb on - strand, within PfGW456L13_269at 312.184 kb on - strand, within PfGW456L13_269at 312.184 kb on - strand, within PfGW456L13_269at 312.184 kb on - strand, within PfGW456L13_269at 312.184 kb on - strand, within PfGW456L13_269at 312.184 kb on - strand, within PfGW456L13_269at 312.184 kb on - strand, within PfGW456L13_269

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.5 mg/ml
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309,930 + PfGW456L13_266 0.60 +0.5
310,024 + PfGW456L13_266 0.65 -0.4
310,024 + PfGW456L13_266 0.65 -0.6
310,024 + PfGW456L13_266 0.65 -0.1
310,168 - PfGW456L13_266 0.72 -2.2
310,168 - PfGW456L13_266 0.72 -0.0
310,168 - PfGW456L13_266 0.72 -1.6
310,226 + PfGW456L13_266 0.76 +0.7
310,226 + PfGW456L13_266 0.76 -0.6
310,227 - PfGW456L13_266 0.76 +0.5
310,227 - PfGW456L13_266 0.76 -0.4
310,227 - PfGW456L13_266 0.76 -0.1
310,333 + PfGW456L13_266 0.81 +0.2
310,410 + PfGW456L13_266 0.85 +0.9
310,411 - PfGW456L13_266 0.85 +0.3
310,436 + PfGW456L13_266 0.86 +0.2
310,436 + PfGW456L13_266 0.86 +1.1
310,689 + -0.2
310,689 + -1.4
310,689 + +0.1
310,689 + +0.1
310,689 + -0.4
310,689 + +0.4
310,689 + +0.4
310,690 - +0.9
310,690 - +0.4
310,690 - -0.3
310,912 + PfGW456L13_267 0.38 +0.1
310,912 + PfGW456L13_267 0.38 +0.9
310,913 - PfGW456L13_267 0.38 +0.7
311,164 + PfGW456L13_267 0.85 +0.3
311,383 + PfGW456L13_268 0.23 -0.8
311,383 + PfGW456L13_268 0.23 +0.3
311,383 + PfGW456L13_268 0.23 +0.5
311,383 + PfGW456L13_268 0.23 +0.6
311,383 + PfGW456L13_268 0.23 -0.4
311,383 + PfGW456L13_268 0.23 -0.2
311,384 - PfGW456L13_268 0.24 -0.1
311,384 - PfGW456L13_268 0.24 -0.1
311,384 - PfGW456L13_268 0.24 +0.7
311,384 - PfGW456L13_268 0.24 +1.4
311,384 - PfGW456L13_268 0.24 -0.4
311,461 + PfGW456L13_268 0.37 -0.1
311,461 + PfGW456L13_268 0.37 +0.0
311,462 - PfGW456L13_268 0.37 +0.1
311,462 - PfGW456L13_268 0.37 +0.3
311,522 + PfGW456L13_268 0.48 +0.4
311,523 - PfGW456L13_268 0.48 -0.9
311,523 - PfGW456L13_268 0.48 +0.8
311,523 - PfGW456L13_268 0.48 -0.1
311,592 + PfGW456L13_268 0.60 +0.4
311,624 + PfGW456L13_268 0.66 +0.0
311,625 - PfGW456L13_268 0.66 -0.3
311,826 + -0.7
311,827 - -1.1
311,865 + -0.7
311,865 + +0.7
311,865 + +0.0
311,865 + -1.5
311,865 + -1.5
311,866 - +0.7
311,866 - +0.7
311,866 - -0.3
311,866 - -0.4
311,866 - -0.5
311,878 + -0.1
311,878 + +0.8
311,878 + -0.1
311,878 + -1.9
311,879 - -0.5
311,879 - +0.5
311,879 - +1.7
311,879 - +0.3
311,879 - +0.7
311,879 - -0.2
311,879 - -0.1
311,879 - +0.2
311,948 - -0.1
312,034 + PfGW456L13_269 0.11 -0.9
312,067 + PfGW456L13_269 0.13 +0.4
312,183 + PfGW456L13_269 0.21 -0.4
312,183 + PfGW456L13_269 0.21 +0.4
312,183 + PfGW456L13_269 0.21 -0.7
312,183 + PfGW456L13_269 0.21 -0.2
312,183 + PfGW456L13_269 0.21 +0.1
312,183 + PfGW456L13_269 0.21 -0.3
312,183 + PfGW456L13_269 0.21 -1.8
312,183 + PfGW456L13_269 0.21 -0.7
312,184 - PfGW456L13_269 0.21 -0.1
312,184 - PfGW456L13_269 0.21 +1.6
312,184 - PfGW456L13_269 0.21 +0.5
312,184 - PfGW456L13_269 0.21 -0.4
312,184 - PfGW456L13_269 0.21 +1.2
312,184 - PfGW456L13_269 0.21 -0.3
312,184 - PfGW456L13_269 0.21 -0.1

Or see this region's nucleotide sequence