Experiment: Bacitracin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2403 and PfGW456L13_2404 are separated by 93 nucleotides PfGW456L13_2404 and PfGW456L13_2405 are separated by 56 nucleotides PfGW456L13_2405 and PfGW456L13_2406 are separated by 222 nucleotides
PfGW456L13_2403 - Pirin, at 2,666,807 to 2,667,673
_2403
PfGW456L13_2404 - Nicotinamidase family protein YcaC, at 2,667,767 to 2,668,450
_2404
PfGW456L13_2405 - Nicotinamidase family protein YcaC, at 2,668,507 to 2,669,133
_2405
PfGW456L13_2406 - Mechanosensitive ion channel, at 2,669,356 to 2,670,798
_2406
Position (kb)
2667
2668
2669 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2666.828 kb on + strand at 2666.828 kb on + strand at 2666.829 kb on - strand at 2666.829 kb on - strand at 2666.829 kb on - strand at 2666.829 kb on - strand at 2666.829 kb on - strand at 2666.829 kb on - strand at 2667.023 kb on + strand, within PfGW456L13_2403 at 2667.671 kb on + strand at 2667.672 kb on - strand at 2667.672 kb on - strand at 2667.686 kb on + strand at 2667.687 kb on - strand at 2667.699 kb on + strand at 2667.700 kb on - strand at 2667.712 kb on + strand at 2667.779 kb on + strand at 2667.780 kb on - strand at 2667.780 kb on - strand at 2667.780 kb on - strand at 2668.031 kb on + strand, within PfGW456L13_2404 at 2668.031 kb on + strand, within PfGW456L13_2404 at 2668.031 kb on + strand, within PfGW456L13_2404 at 2668.031 kb on + strand, within PfGW456L13_2404 at 2668.031 kb on + strand, within PfGW456L13_2404 at 2668.031 kb on + strand, within PfGW456L13_2404 at 2668.032 kb on - strand, within PfGW456L13_2404 at 2668.032 kb on - strand, within PfGW456L13_2404 at 2668.181 kb on + strand, within PfGW456L13_2404 at 2668.181 kb on + strand, within PfGW456L13_2404 at 2668.181 kb on + strand, within PfGW456L13_2404 at 2668.182 kb on - strand, within PfGW456L13_2404 at 2668.352 kb on + strand, within PfGW456L13_2404 at 2668.353 kb on - strand, within PfGW456L13_2404 at 2668.394 kb on + strand at 2668.395 kb on - strand at 2668.395 kb on - strand at 2668.395 kb on - strand at 2668.500 kb on + strand at 2668.500 kb on + strand at 2668.519 kb on + strand at 2668.519 kb on + strand at 2668.520 kb on - strand at 2668.520 kb on - strand at 2668.651 kb on + strand, within PfGW456L13_2405 at 2668.651 kb on + strand, within PfGW456L13_2405 at 2668.651 kb on + strand, within PfGW456L13_2405 at 2668.652 kb on - strand, within PfGW456L13_2405 at 2668.747 kb on + strand, within PfGW456L13_2405 at 2668.747 kb on + strand, within PfGW456L13_2405 at 2668.747 kb on + strand, within PfGW456L13_2405 at 2668.747 kb on + strand, within PfGW456L13_2405 at 2668.748 kb on - strand, within PfGW456L13_2405 at 2668.748 kb on - strand, within PfGW456L13_2405 at 2668.748 kb on - strand, within PfGW456L13_2405 at 2668.748 kb on - strand, within PfGW456L13_2405 at 2668.969 kb on - strand, within PfGW456L13_2405 at 2669.076 kb on + strand at 2669.076 kb on + strand at 2669.076 kb on + strand at 2669.107 kb on + strand at 2669.107 kb on + strand at 2669.107 kb on + strand at 2669.107 kb on + strand at 2669.108 kb on - strand at 2669.131 kb on + strand at 2669.132 kb on - strand at 2669.188 kb on - strand at 2669.199 kb on + strand at 2669.199 kb on + strand at 2669.199 kb on + strand at 2669.199 kb on + strand at 2669.199 kb on + strand at 2669.199 kb on + strand at 2669.199 kb on + strand at 2669.200 kb on - strand at 2669.200 kb on - strand at 2669.200 kb on - strand at 2669.200 kb on - strand at 2669.200 kb on - strand at 2669.200 kb on - strand at 2669.200 kb on - strand at 2669.213 kb on + strand at 2669.213 kb on + strand at 2669.213 kb on + strand at 2669.215 kb on + strand at 2669.299 kb on + strand at 2669.299 kb on + strand at 2669.300 kb on - strand at 2669.300 kb on - strand at 2669.300 kb on - strand at 2669.428 kb on + strand at 2669.428 kb on + strand at 2669.429 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.5 mg/ml remove 2,666,828 + +0.9 2,666,828 + -0.3 2,666,829 - +0.1 2,666,829 - -0.0 2,666,829 - +0.2 2,666,829 - -0.2 2,666,829 - +0.0 2,666,829 - +0.4 2,667,023 + PfGW456L13_2403 0.25 +0.6 2,667,671 + +0.3 2,667,672 - +1.6 2,667,672 - +0.3 2,667,686 + +0.1 2,667,687 - -0.8 2,667,699 + -0.9 2,667,700 - +1.2 2,667,712 + +0.3 2,667,779 + +0.2 2,667,780 - +0.6 2,667,780 - -0.7 2,667,780 - +0.3 2,668,031 + PfGW456L13_2404 0.39 +0.3 2,668,031 + PfGW456L13_2404 0.39 +0.3 2,668,031 + PfGW456L13_2404 0.39 -1.7 2,668,031 + PfGW456L13_2404 0.39 -0.1 2,668,031 + PfGW456L13_2404 0.39 -0.5 2,668,031 + PfGW456L13_2404 0.39 +0.2 2,668,032 - PfGW456L13_2404 0.39 -2.4 2,668,032 - PfGW456L13_2404 0.39 -0.6 2,668,181 + PfGW456L13_2404 0.61 -0.8 2,668,181 + PfGW456L13_2404 0.61 -1.2 2,668,181 + PfGW456L13_2404 0.61 +0.1 2,668,182 - PfGW456L13_2404 0.61 -0.7 2,668,352 + PfGW456L13_2404 0.86 -0.7 2,668,353 - PfGW456L13_2404 0.86 -0.2 2,668,394 + -0.7 2,668,395 - -1.4 2,668,395 - -1.3 2,668,395 - -0.5 2,668,500 + +0.6 2,668,500 + +0.3 2,668,519 + -0.4 2,668,519 + -2.5 2,668,520 - +0.8 2,668,520 - +2.2 2,668,651 + PfGW456L13_2405 0.23 +0.1 2,668,651 + PfGW456L13_2405 0.23 -0.4 2,668,651 + PfGW456L13_2405 0.23 +0.5 2,668,652 - PfGW456L13_2405 0.23 -1.7 2,668,747 + PfGW456L13_2405 0.38 +0.3 2,668,747 + PfGW456L13_2405 0.38 +0.1 2,668,747 + PfGW456L13_2405 0.38 -0.1 2,668,747 + PfGW456L13_2405 0.38 -1.5 2,668,748 - PfGW456L13_2405 0.38 -1.2 2,668,748 - PfGW456L13_2405 0.38 +1.3 2,668,748 - PfGW456L13_2405 0.38 +0.4 2,668,748 - PfGW456L13_2405 0.38 -0.3 2,668,969 - PfGW456L13_2405 0.74 +0.6 2,669,076 + +0.3 2,669,076 + -1.3 2,669,076 + -0.5 2,669,107 + +0.6 2,669,107 + +0.1 2,669,107 + +1.3 2,669,107 + +0.1 2,669,108 - +0.2 2,669,131 + +0.2 2,669,132 - -1.3 2,669,188 - +0.7 2,669,199 + -0.3 2,669,199 + -0.3 2,669,199 + +0.4 2,669,199 + +0.0 2,669,199 + +0.3 2,669,199 + +0.4 2,669,199 + -1.2 2,669,200 - -0.0 2,669,200 - -2.7 2,669,200 - +1.6 2,669,200 - +0.9 2,669,200 - +0.3 2,669,200 - -0.5 2,669,200 - +0.7 2,669,213 + +0.2 2,669,213 + +0.3 2,669,213 + +1.8 2,669,215 + +0.5 2,669,299 + -1.1 2,669,299 + -0.5 2,669,300 - +0.8 2,669,300 - +0.5 2,669,300 - -0.2 2,669,428 + -0.2 2,669,428 + -0.4 2,669,429 - -0.6
Or see this region's nucleotide sequence