Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2404

Experiment: Bacitracin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2403 and PfGW456L13_2404 are separated by 93 nucleotidesPfGW456L13_2404 and PfGW456L13_2405 are separated by 56 nucleotidesPfGW456L13_2405 and PfGW456L13_2406 are separated by 222 nucleotides PfGW456L13_2403 - Pirin, at 2,666,807 to 2,667,673 _2403 PfGW456L13_2404 - Nicotinamidase family protein YcaC, at 2,667,767 to 2,668,450 _2404 PfGW456L13_2405 - Nicotinamidase family protein YcaC, at 2,668,507 to 2,669,133 _2405 PfGW456L13_2406 - Mechanosensitive ion channel, at 2,669,356 to 2,670,798 _2406 Position (kb) 2667 2668 2669Strain fitness (log2 ratio) -2 -1 0 1 2at 2666.828 kb on + strandat 2666.828 kb on + strandat 2666.829 kb on - strandat 2666.829 kb on - strandat 2666.829 kb on - strandat 2666.829 kb on - strandat 2666.829 kb on - strandat 2666.829 kb on - strandat 2667.023 kb on + strand, within PfGW456L13_2403at 2667.671 kb on + strandat 2667.672 kb on - strandat 2667.672 kb on - strandat 2667.686 kb on + strandat 2667.687 kb on - strandat 2667.699 kb on + strandat 2667.700 kb on - strandat 2667.712 kb on + strandat 2667.779 kb on + strandat 2667.780 kb on - strandat 2667.780 kb on - strandat 2667.780 kb on - strandat 2668.031 kb on + strand, within PfGW456L13_2404at 2668.031 kb on + strand, within PfGW456L13_2404at 2668.031 kb on + strand, within PfGW456L13_2404at 2668.031 kb on + strand, within PfGW456L13_2404at 2668.031 kb on + strand, within PfGW456L13_2404at 2668.031 kb on + strand, within PfGW456L13_2404at 2668.032 kb on - strand, within PfGW456L13_2404at 2668.032 kb on - strand, within PfGW456L13_2404at 2668.181 kb on + strand, within PfGW456L13_2404at 2668.181 kb on + strand, within PfGW456L13_2404at 2668.181 kb on + strand, within PfGW456L13_2404at 2668.182 kb on - strand, within PfGW456L13_2404at 2668.352 kb on + strand, within PfGW456L13_2404at 2668.353 kb on - strand, within PfGW456L13_2404at 2668.394 kb on + strandat 2668.395 kb on - strandat 2668.395 kb on - strandat 2668.395 kb on - strandat 2668.500 kb on + strandat 2668.500 kb on + strandat 2668.519 kb on + strandat 2668.519 kb on + strandat 2668.520 kb on - strandat 2668.520 kb on - strandat 2668.651 kb on + strand, within PfGW456L13_2405at 2668.651 kb on + strand, within PfGW456L13_2405at 2668.651 kb on + strand, within PfGW456L13_2405at 2668.652 kb on - strand, within PfGW456L13_2405at 2668.747 kb on + strand, within PfGW456L13_2405at 2668.747 kb on + strand, within PfGW456L13_2405at 2668.747 kb on + strand, within PfGW456L13_2405at 2668.747 kb on + strand, within PfGW456L13_2405at 2668.748 kb on - strand, within PfGW456L13_2405at 2668.748 kb on - strand, within PfGW456L13_2405at 2668.748 kb on - strand, within PfGW456L13_2405at 2668.748 kb on - strand, within PfGW456L13_2405at 2668.969 kb on - strand, within PfGW456L13_2405at 2669.076 kb on + strandat 2669.076 kb on + strandat 2669.076 kb on + strandat 2669.107 kb on + strandat 2669.107 kb on + strandat 2669.107 kb on + strandat 2669.107 kb on + strandat 2669.108 kb on - strandat 2669.131 kb on + strandat 2669.132 kb on - strandat 2669.188 kb on - strandat 2669.199 kb on + strandat 2669.199 kb on + strandat 2669.199 kb on + strandat 2669.199 kb on + strandat 2669.199 kb on + strandat 2669.199 kb on + strandat 2669.199 kb on + strandat 2669.200 kb on - strandat 2669.200 kb on - strandat 2669.200 kb on - strandat 2669.200 kb on - strandat 2669.200 kb on - strandat 2669.200 kb on - strandat 2669.200 kb on - strandat 2669.213 kb on + strandat 2669.213 kb on + strandat 2669.213 kb on + strandat 2669.215 kb on + strandat 2669.299 kb on + strandat 2669.299 kb on + strandat 2669.300 kb on - strandat 2669.300 kb on - strandat 2669.300 kb on - strandat 2669.428 kb on + strandat 2669.428 kb on + strandat 2669.429 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.5 mg/ml
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2,666,828 + +0.9
2,666,828 + -0.3
2,666,829 - +0.1
2,666,829 - -0.0
2,666,829 - +0.2
2,666,829 - -0.2
2,666,829 - +0.0
2,666,829 - +0.4
2,667,023 + PfGW456L13_2403 0.25 +0.6
2,667,671 + +0.3
2,667,672 - +1.6
2,667,672 - +0.3
2,667,686 + +0.1
2,667,687 - -0.8
2,667,699 + -0.9
2,667,700 - +1.2
2,667,712 + +0.3
2,667,779 + +0.2
2,667,780 - +0.6
2,667,780 - -0.7
2,667,780 - +0.3
2,668,031 + PfGW456L13_2404 0.39 +0.3
2,668,031 + PfGW456L13_2404 0.39 +0.3
2,668,031 + PfGW456L13_2404 0.39 -1.7
2,668,031 + PfGW456L13_2404 0.39 -0.1
2,668,031 + PfGW456L13_2404 0.39 -0.5
2,668,031 + PfGW456L13_2404 0.39 +0.2
2,668,032 - PfGW456L13_2404 0.39 -2.4
2,668,032 - PfGW456L13_2404 0.39 -0.6
2,668,181 + PfGW456L13_2404 0.61 -0.8
2,668,181 + PfGW456L13_2404 0.61 -1.2
2,668,181 + PfGW456L13_2404 0.61 +0.1
2,668,182 - PfGW456L13_2404 0.61 -0.7
2,668,352 + PfGW456L13_2404 0.86 -0.7
2,668,353 - PfGW456L13_2404 0.86 -0.2
2,668,394 + -0.7
2,668,395 - -1.4
2,668,395 - -1.3
2,668,395 - -0.5
2,668,500 + +0.6
2,668,500 + +0.3
2,668,519 + -0.4
2,668,519 + -2.5
2,668,520 - +0.8
2,668,520 - +2.2
2,668,651 + PfGW456L13_2405 0.23 +0.1
2,668,651 + PfGW456L13_2405 0.23 -0.4
2,668,651 + PfGW456L13_2405 0.23 +0.5
2,668,652 - PfGW456L13_2405 0.23 -1.7
2,668,747 + PfGW456L13_2405 0.38 +0.3
2,668,747 + PfGW456L13_2405 0.38 +0.1
2,668,747 + PfGW456L13_2405 0.38 -0.1
2,668,747 + PfGW456L13_2405 0.38 -1.5
2,668,748 - PfGW456L13_2405 0.38 -1.2
2,668,748 - PfGW456L13_2405 0.38 +1.3
2,668,748 - PfGW456L13_2405 0.38 +0.4
2,668,748 - PfGW456L13_2405 0.38 -0.3
2,668,969 - PfGW456L13_2405 0.74 +0.6
2,669,076 + +0.3
2,669,076 + -1.3
2,669,076 + -0.5
2,669,107 + +0.6
2,669,107 + +0.1
2,669,107 + +1.3
2,669,107 + +0.1
2,669,108 - +0.2
2,669,131 + +0.2
2,669,132 - -1.3
2,669,188 - +0.7
2,669,199 + -0.3
2,669,199 + -0.3
2,669,199 + +0.4
2,669,199 + +0.0
2,669,199 + +0.3
2,669,199 + +0.4
2,669,199 + -1.2
2,669,200 - -0.0
2,669,200 - -2.7
2,669,200 - +1.6
2,669,200 - +0.9
2,669,200 - +0.3
2,669,200 - -0.5
2,669,200 - +0.7
2,669,213 + +0.2
2,669,213 + +0.3
2,669,213 + +1.8
2,669,215 + +0.5
2,669,299 + -1.1
2,669,299 + -0.5
2,669,300 - +0.8
2,669,300 - +0.5
2,669,300 - -0.2
2,669,428 + -0.2
2,669,428 + -0.4
2,669,429 - -0.6

Or see this region's nucleotide sequence