Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1853

Experiment: Bacitracin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1851 and PfGW456L13_1852 are separated by 113 nucleotidesPfGW456L13_1852 and PfGW456L13_1853 are separated by 0 nucleotidesPfGW456L13_1853 and PfGW456L13_1854 are separated by 304 nucleotidesPfGW456L13_1854 and PfGW456L13_1855 overlap by 11 nucleotides PfGW456L13_1851 - Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4), at 2,038,858 to 2,039,475 _1851 PfGW456L13_1852 - Holliday junction DNA helicase RuvA, at 2,039,589 to 2,040,197 _1852 PfGW456L13_1853 - Holliday junction DNA helicase RuvB, at 2,040,198 to 2,041,259 _1853 PfGW456L13_1854 - 4-hydroxybenzoyl-CoA thioesterase family active site, at 2,041,564 to 2,041,854 _1854 PfGW456L13_1855 - MotA/TolQ/ExbB proton channel family protein, at 2,041,844 to 2,042,539 _1855 Position (kb) 2040 2041 2042Strain fitness (log2 ratio) -3 -2 -1 0 1at 2039.254 kb on + strand, within PfGW456L13_1851at 2039.255 kb on - strand, within PfGW456L13_1851at 2039.476 kb on + strandat 2039.476 kb on + strandat 2039.544 kb on - strandat 2039.650 kb on + strand, within PfGW456L13_1852at 2039.650 kb on + strand, within PfGW456L13_1852at 2039.650 kb on + strand, within PfGW456L13_1852at 2039.650 kb on + strand, within PfGW456L13_1852at 2039.650 kb on + strand, within PfGW456L13_1852at 2039.650 kb on + strand, within PfGW456L13_1852at 2039.651 kb on - strand, within PfGW456L13_1852at 2039.651 kb on - strand, within PfGW456L13_1852at 2039.651 kb on - strand, within PfGW456L13_1852at 2039.764 kb on + strand, within PfGW456L13_1852at 2039.764 kb on + strand, within PfGW456L13_1852at 2039.765 kb on - strand, within PfGW456L13_1852at 2039.765 kb on - strand, within PfGW456L13_1852at 2039.769 kb on + strand, within PfGW456L13_1852at 2039.769 kb on + strand, within PfGW456L13_1852at 2039.769 kb on + strand, within PfGW456L13_1852at 2039.769 kb on + strand, within PfGW456L13_1852at 2039.770 kb on - strand, within PfGW456L13_1852at 2039.893 kb on + strand, within PfGW456L13_1852at 2039.893 kb on + strand, within PfGW456L13_1852at 2039.893 kb on + strand, within PfGW456L13_1852at 2039.894 kb on - strand, within PfGW456L13_1852at 2039.894 kb on - strand, within PfGW456L13_1852at 2040.100 kb on - strand, within PfGW456L13_1852at 2040.195 kb on + strandat 2040.195 kb on + strandat 2040.196 kb on - strandat 2040.196 kb on - strandat 2040.196 kb on - strandat 2040.196 kb on - strandat 2040.294 kb on + strandat 2040.294 kb on + strandat 2040.294 kb on + strandat 2040.295 kb on - strandat 2040.295 kb on - strandat 2040.357 kb on - strand, within PfGW456L13_1853at 2040.753 kb on + strand, within PfGW456L13_1853at 2040.754 kb on - strand, within PfGW456L13_1853at 2040.927 kb on - strand, within PfGW456L13_1853at 2041.114 kb on - strand, within PfGW456L13_1853at 2041.131 kb on + strand, within PfGW456L13_1853at 2041.131 kb on + strand, within PfGW456L13_1853at 2041.132 kb on - strand, within PfGW456L13_1853at 2041.132 kb on - strand, within PfGW456L13_1853at 2041.176 kb on + strandat 2041.177 kb on - strandat 2041.192 kb on + strandat 2041.228 kb on + strandat 2041.229 kb on - strandat 2041.229 kb on - strandat 2041.229 kb on - strandat 2041.258 kb on - strandat 2041.258 kb on - strandat 2041.258 kb on - strandat 2041.261 kb on + strandat 2041.262 kb on - strandat 2041.292 kb on + strandat 2041.292 kb on + strandat 2041.292 kb on + strandat 2041.292 kb on + strandat 2041.293 kb on - strandat 2041.293 kb on - strandat 2041.293 kb on - strandat 2041.293 kb on - strandat 2041.293 kb on - strandat 2041.293 kb on - strandat 2041.293 kb on - strandat 2041.308 kb on + strandat 2041.308 kb on + strandat 2041.309 kb on - strandat 2041.309 kb on - strandat 2041.309 kb on - strandat 2041.374 kb on + strandat 2041.374 kb on + strandat 2041.374 kb on + strandat 2041.381 kb on + strandat 2041.381 kb on + strandat 2041.381 kb on + strandat 2041.381 kb on + strandat 2041.381 kb on + strandat 2041.386 kb on + strandat 2041.435 kb on + strandat 2041.438 kb on + strandat 2041.438 kb on + strandat 2041.468 kb on + strandat 2041.468 kb on + strandat 2041.468 kb on + strandat 2041.471 kb on + strandat 2041.471 kb on + strandat 2041.471 kb on + strandat 2041.471 kb on + strandat 2041.471 kb on + strandat 2041.476 kb on + strandat 2041.476 kb on + strandat 2041.476 kb on + strandat 2041.480 kb on + strandat 2041.480 kb on + strandat 2041.491 kb on + strandat 2041.631 kb on + strand, within PfGW456L13_1854at 2041.643 kb on + strand, within PfGW456L13_1854at 2041.784 kb on + strand, within PfGW456L13_1854at 2041.818 kb on + strand, within PfGW456L13_1854at 2041.818 kb on + strand, within PfGW456L13_1854

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.5 mg/ml
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2,039,254 + PfGW456L13_1851 0.64 -0.8
2,039,255 - PfGW456L13_1851 0.64 -3.1
2,039,476 + +0.6
2,039,476 + +0.1
2,039,544 - -1.0
2,039,650 + PfGW456L13_1852 0.10 -0.6
2,039,650 + PfGW456L13_1852 0.10 -3.2
2,039,650 + PfGW456L13_1852 0.10 -2.5
2,039,650 + PfGW456L13_1852 0.10 -0.8
2,039,650 + PfGW456L13_1852 0.10 -2.2
2,039,650 + PfGW456L13_1852 0.10 +0.3
2,039,651 - PfGW456L13_1852 0.10 -2.6
2,039,651 - PfGW456L13_1852 0.10 -0.6
2,039,651 - PfGW456L13_1852 0.10 -1.1
2,039,764 + PfGW456L13_1852 0.29 -0.2
2,039,764 + PfGW456L13_1852 0.29 -1.6
2,039,765 - PfGW456L13_1852 0.29 -3.0
2,039,765 - PfGW456L13_1852 0.29 -1.7
2,039,769 + PfGW456L13_1852 0.30 -1.6
2,039,769 + PfGW456L13_1852 0.30 -2.2
2,039,769 + PfGW456L13_1852 0.30 -0.2
2,039,769 + PfGW456L13_1852 0.30 -2.4
2,039,770 - PfGW456L13_1852 0.30 -0.8
2,039,893 + PfGW456L13_1852 0.50 -1.9
2,039,893 + PfGW456L13_1852 0.50 +0.2
2,039,893 + PfGW456L13_1852 0.50 -2.3
2,039,894 - PfGW456L13_1852 0.50 -1.8
2,039,894 - PfGW456L13_1852 0.50 -2.0
2,040,100 - PfGW456L13_1852 0.84 -1.4
2,040,195 + -1.0
2,040,195 + -0.7
2,040,196 - -0.8
2,040,196 - -2.1
2,040,196 - +0.1
2,040,196 - -1.8
2,040,294 + -2.2
2,040,294 + -0.7
2,040,294 + -1.7
2,040,295 - -2.4
2,040,295 - -1.6
2,040,357 - PfGW456L13_1853 0.15 -0.5
2,040,753 + PfGW456L13_1853 0.52 +0.2
2,040,754 - PfGW456L13_1853 0.52 -3.0
2,040,927 - PfGW456L13_1853 0.69 -1.1
2,041,114 - PfGW456L13_1853 0.86 -1.0
2,041,131 + PfGW456L13_1853 0.88 -1.6
2,041,131 + PfGW456L13_1853 0.88 -1.3
2,041,132 - PfGW456L13_1853 0.88 -2.0
2,041,132 - PfGW456L13_1853 0.88 -2.7
2,041,176 + +0.4
2,041,177 - -1.6
2,041,192 + -0.4
2,041,228 + -0.2
2,041,229 - -2.2
2,041,229 - +0.8
2,041,229 - -2.4
2,041,258 - -1.4
2,041,258 - -1.7
2,041,258 - -0.4
2,041,261 + -0.5
2,041,262 - -1.1
2,041,292 + -0.4
2,041,292 + -0.9
2,041,292 + -1.6
2,041,292 + +0.5
2,041,293 - -0.5
2,041,293 - -1.3
2,041,293 - -0.7
2,041,293 - -0.4
2,041,293 - -1.6
2,041,293 - -1.8
2,041,293 - -2.2
2,041,308 + -0.2
2,041,308 + +0.8
2,041,309 - -1.5
2,041,309 - -1.2
2,041,309 - +0.5
2,041,374 + +0.2
2,041,374 + +0.3
2,041,374 + -0.4
2,041,381 + +0.2
2,041,381 + -1.6
2,041,381 + -1.2
2,041,381 + -0.3
2,041,381 + -0.2
2,041,386 + -0.7
2,041,435 + -0.8
2,041,438 + +1.0
2,041,438 + -1.6
2,041,468 + -0.8
2,041,468 + +0.2
2,041,468 + -0.4
2,041,471 + -0.2
2,041,471 + +0.1
2,041,471 + +0.4
2,041,471 + -0.1
2,041,471 + +0.1
2,041,476 + +0.8
2,041,476 + +0.4
2,041,476 + -0.8
2,041,480 + +0.2
2,041,480 + +0.2
2,041,491 + -1.1
2,041,631 + PfGW456L13_1854 0.23 +0.6
2,041,643 + PfGW456L13_1854 0.27 -0.2
2,041,784 + PfGW456L13_1854 0.76 -2.1
2,041,818 + PfGW456L13_1854 0.87 -1.2
2,041,818 + PfGW456L13_1854 0.87 -0.1

Or see this region's nucleotide sequence