Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1656

Experiment: Bacitracin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1655 and PfGW456L13_1656 are separated by 79 nucleotidesPfGW456L13_1656 and PfGW456L13_1657 are separated by 24 nucleotides PfGW456L13_1655 - D-alanine--D-alanine ligase (EC 6.3.2.4), at 1,818,068 to 1,819,051 _1655 PfGW456L13_1656 - Cell division protein FtsQ, at 1,819,131 to 1,819,925 _1656 PfGW456L13_1657 - Cell division protein FtsA, at 1,819,950 to 1,821,200 _1657 Position (kb) 1819 1820Strain fitness (log2 ratio) -2 -1 0 1at 1818.481 kb on + strand, within PfGW456L13_1655at 1818.604 kb on + strand, within PfGW456L13_1655at 1818.608 kb on + strand, within PfGW456L13_1655at 1818.737 kb on + strand, within PfGW456L13_1655at 1818.737 kb on + strand, within PfGW456L13_1655at 1819.923 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.5 mg/ml
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1,818,481 + PfGW456L13_1655 0.42 -1.2
1,818,604 + PfGW456L13_1655 0.54 -2.2
1,818,608 + PfGW456L13_1655 0.55 -1.3
1,818,737 + PfGW456L13_1655 0.68 -1.2
1,818,737 + PfGW456L13_1655 0.68 -1.7
1,819,923 + -0.8

Or see this region's nucleotide sequence