Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1359

Experiment: Bacitracin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1357 and PfGW456L13_1358 are separated by 73 nucleotidesPfGW456L13_1358 and PfGW456L13_1359 are separated by 9 nucleotidesPfGW456L13_1359 and PfGW456L13_1360 are separated by 10 nucleotides PfGW456L13_1357 - Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18), at 1,501,965 to 1,502,654 _1357 PfGW456L13_1358 - Iojap protein, at 1,502,728 to 1,503,222 _1358 PfGW456L13_1359 - LSU m3Psi1915 methyltransferase RlmH, at 1,503,232 to 1,503,699 _1359 PfGW456L13_1360 - Penicillin-binding protein 2 (PBP-2), at 1,503,710 to 1,505,605 _1360 Position (kb) 1503 1504Strain fitness (log2 ratio) -2 -1 0 1at 1502.689 kb on + strandat 1502.689 kb on + strandat 1502.689 kb on + strandat 1502.689 kb on + strandat 1502.920 kb on + strand, within PfGW456L13_1358at 1503.298 kb on + strand, within PfGW456L13_1359at 1503.298 kb on + strand, within PfGW456L13_1359at 1503.298 kb on + strand, within PfGW456L13_1359at 1503.354 kb on + strand, within PfGW456L13_1359at 1503.474 kb on + strand, within PfGW456L13_1359at 1503.655 kb on + strandat 1503.655 kb on + strandat 1503.655 kb on + strandat 1503.655 kb on + strandat 1503.655 kb on + strandat 1503.655 kb on + strandat 1503.655 kb on + strandat 1503.688 kb on + strandat 1503.688 kb on + strandat 1503.697 kb on + strandat 1503.697 kb on + strandat 1503.697 kb on + strandat 1503.697 kb on + strandat 1503.697 kb on + strandat 1503.697 kb on + strandat 1503.697 kb on + strandat 1503.697 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.5 mg/ml
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1,502,689 + +0.9
1,502,689 + +0.6
1,502,689 + +1.5
1,502,689 + +0.4
1,502,920 + PfGW456L13_1358 0.39 -2.4
1,503,298 + PfGW456L13_1359 0.14 +0.1
1,503,298 + PfGW456L13_1359 0.14 -2.4
1,503,298 + PfGW456L13_1359 0.14 -0.7
1,503,354 + PfGW456L13_1359 0.26 +0.1
1,503,474 + PfGW456L13_1359 0.52 -0.7
1,503,655 + -0.8
1,503,655 + +0.3
1,503,655 + -1.2
1,503,655 + -0.1
1,503,655 + -0.8
1,503,655 + -0.1
1,503,655 + -0.2
1,503,688 + -1.1
1,503,688 + -0.4
1,503,697 + -1.6
1,503,697 + +0.3
1,503,697 + -0.2
1,503,697 + -2.4
1,503,697 + +0.7
1,503,697 + -0.4
1,503,697 + +0.5
1,503,697 + +0.8

Or see this region's nucleotide sequence