Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF910

Experiment: LB_plus_SM_buffer with P22_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF907 and GFF908 are separated by 10 nucleotidesGFF908 and GFF909 overlap by 1 nucleotidesGFF909 and GFF910 are separated by 22 nucleotidesGFF910 and GFF911 are separated by 11 nucleotidesGFF911 and GFF912 are separated by 58 nucleotides GFF907 - FIG01045571: hypothetical protein, at 87,302 to 87,631 GFF907 GFF908 - FIG00628496: hypothetical protein, at 87,642 to 88,004 GFF908 GFF909 - FIG074102: hypothetical protein, at 88,004 to 88,306 GFF909 GFF910 - Putative inner membrane protein, at 88,329 to 89,105 GFF910 GFF911 - Putative inner membrane protein, at 89,117 to 89,761 GFF911 GFF912 - Metallo-dependent hydrolases, subgroup B, at 89,820 to 90,953 GFF912 Position (kb) 88 89 90Strain fitness (log2 ratio) -2 -1 0 1at 87.366 kb on + strand, within GFF907at 87.469 kb on + strand, within GFF907at 87.629 kb on + strandat 87.653 kb on + strandat 87.834 kb on - strand, within GFF908at 87.859 kb on - strand, within GFF908at 87.948 kb on - strand, within GFF908at 88.038 kb on + strand, within GFF909at 88.038 kb on + strand, within GFF909at 88.123 kb on + strand, within GFF909at 88.128 kb on + strand, within GFF909at 88.128 kb on + strand, within GFF909at 88.136 kb on - strand, within GFF909at 88.229 kb on + strand, within GFF909at 88.230 kb on - strand, within GFF909at 88.343 kb on - strandat 88.448 kb on + strand, within GFF910at 88.688 kb on - strand, within GFF910at 88.928 kb on + strand, within GFF910at 89.207 kb on - strand, within GFF911at 89.210 kb on + strand, within GFF911at 89.211 kb on - strand, within GFF911at 89.213 kb on + strand, within GFF911at 89.213 kb on + strand, within GFF911at 89.213 kb on + strand, within GFF911at 89.213 kb on + strand, within GFF911at 89.213 kb on + strand, within GFF911at 89.213 kb on + strand, within GFF911at 89.214 kb on - strand, within GFF911at 89.214 kb on - strand, within GFF911at 89.219 kb on + strand, within GFF911at 89.237 kb on - strand, within GFF911at 89.498 kb on + strand, within GFF911at 89.518 kb on + strand, within GFF911at 89.678 kb on + strand, within GFF911at 89.678 kb on + strand, within GFF911at 89.679 kb on - strand, within GFF911at 89.679 kb on - strand, within GFF911at 89.679 kb on - strand, within GFF911at 89.759 kb on + strandat 89.759 kb on + strandat 89.830 kb on + strandat 89.830 kb on + strandat 89.870 kb on + strandat 89.871 kb on - strandat 89.873 kb on + strandat 89.874 kb on - strandat 90.096 kb on - strand, within GFF912

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with P22_phage 15 MOI
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87,366 + GFF907 0.19 -1.0
87,469 + GFF907 0.51 +0.8
87,629 + +0.7
87,653 + +0.3
87,834 - GFF908 0.53 -0.4
87,859 - GFF908 0.60 +0.0
87,948 - GFF908 0.84 -0.2
88,038 + GFF909 0.11 -0.8
88,038 + GFF909 0.11 -2.6
88,123 + GFF909 0.39 +0.5
88,128 + GFF909 0.41 +0.5
88,128 + GFF909 0.41 -0.1
88,136 - GFF909 0.44 +0.3
88,229 + GFF909 0.74 -0.2
88,230 - GFF909 0.75 -0.3
88,343 - +0.9
88,448 + GFF910 0.15 -2.0
88,688 - GFF910 0.46 -0.3
88,928 + GFF910 0.77 -1.1
89,207 - GFF911 0.14 +0.0
89,210 + GFF911 0.14 -0.4
89,211 - GFF911 0.15 +0.3
89,213 + GFF911 0.15 +1.2
89,213 + GFF911 0.15 +1.7
89,213 + GFF911 0.15 -0.6
89,213 + GFF911 0.15 +0.4
89,213 + GFF911 0.15 -0.3
89,213 + GFF911 0.15 -0.2
89,214 - GFF911 0.15 -0.4
89,214 - GFF911 0.15 -0.7
89,219 + GFF911 0.16 -1.8
89,237 - GFF911 0.19 +1.5
89,498 + GFF911 0.59 +0.1
89,518 + GFF911 0.62 +0.5
89,678 + GFF911 0.87 +0.4
89,678 + GFF911 0.87 -0.3
89,679 - GFF911 0.87 -1.0
89,679 - GFF911 0.87 -0.9
89,679 - GFF911 0.87 +0.4
89,759 + -0.7
89,759 + -0.9
89,830 + -0.3
89,830 + -2.2
89,870 + +0.9
89,871 - -0.7
89,873 + +1.2
89,874 - -0.9
90,096 - GFF912 0.24 -1.2

Or see this region's nucleotide sequence