Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF801

Experiment: LB_plus_SM_buffer with P22_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF800 and GFF801 overlap by 4 nucleotidesGFF801 and GFF802 overlap by 4 nucleotides GFF800 - Phage terminase, large subunit, at 146,632 to 148,740 GFF800 GFF801 - FIG01047026: hypothetical protein, at 148,737 to 148,943 GFF801 GFF802 - Phage portal protein, at 148,940 to 150,475 GFF802 Position (kb) 148 149Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 147.792 kb on + strand, within GFF800at 147.870 kb on + strand, within GFF800at 147.980 kb on + strand, within GFF800at 147.980 kb on + strand, within GFF800at 148.014 kb on - strand, within GFF800at 148.115 kb on + strand, within GFF800at 148.251 kb on - strand, within GFF800at 148.264 kb on + strand, within GFF800at 148.265 kb on - strand, within GFF800at 148.396 kb on + strand, within GFF800at 148.396 kb on + strand, within GFF800at 148.396 kb on + strand, within GFF800at 148.447 kb on + strand, within GFF800at 148.523 kb on - strand, within GFF800at 148.753 kb on + strandat 148.753 kb on + strandat 148.773 kb on + strand, within GFF801at 149.024 kb on + strandat 149.024 kb on + strandat 149.090 kb on - strandat 149.543 kb on + strand, within GFF802at 149.708 kb on + strand, within GFF802at 149.793 kb on - strand, within GFF802at 149.812 kb on + strand, within GFF802at 149.813 kb on - strand, within GFF802

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with P22_phage 15 MOI
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147,792 + GFF800 0.55 -1.0
147,870 + GFF800 0.59 +0.3
147,980 + GFF800 0.64 +1.3
147,980 + GFF800 0.64 +2.0
148,014 - GFF800 0.66 +1.2
148,115 + GFF800 0.70 +1.1
148,251 - GFF800 0.77 +2.0
148,264 + GFF800 0.77 +1.5
148,265 - GFF800 0.77 -2.2
148,396 + GFF800 0.84 +1.5
148,396 + GFF800 0.84 -1.8
148,396 + GFF800 0.84 -3.1
148,447 + GFF800 0.86 +0.1
148,523 - GFF800 0.90 +1.2
148,753 + +1.5
148,753 + +0.4
148,773 + GFF801 0.17 -4.2
149,024 + +1.7
149,024 + -0.2
149,090 - +0.7
149,543 + GFF802 0.39 -0.5
149,708 + GFF802 0.50 +0.6
149,793 - GFF802 0.56 -0.4
149,812 + GFF802 0.57 -1.0
149,813 - GFF802 0.57 +1.2

Or see this region's nucleotide sequence