Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF70

Experiment: LB_plus_SM_buffer with P22_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF68 and GFF69 are separated by 107 nucleotidesGFF69 and GFF70 overlap by 1 nucleotidesGFF70 and GFF71 overlap by 1 nucleotidesGFF71 and GFF72 overlap by 4 nucleotides GFF68 - Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8), at 50,598 to 51,878 GFF68 GFF69 - Uncharacterized protein YadU in stf fimbrial cluster, at 51,986 to 52,825 GFF69 GFF70 - Minor fimbrial subunit StfG, at 52,825 to 53,355 GFF70 GFF71 - Minor fimbrial subunit StfF, at 53,355 to 53,831 GFF71 GFF72 - Minor fimbrial subunit StfE, at 53,828 to 54,340 GFF72 Position (kb) 52 53 54Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 51.902 kb on - strandat 52.001 kb on - strandat 52.003 kb on + strandat 52.003 kb on + strandat 52.005 kb on + strandat 52.005 kb on + strandat 52.069 kb on + strandat 52.156 kb on + strand, within GFF69at 52.160 kb on - strand, within GFF69at 52.239 kb on + strand, within GFF69at 52.239 kb on + strand, within GFF69at 52.239 kb on + strand, within GFF69at 52.240 kb on - strand, within GFF69at 52.244 kb on - strand, within GFF69at 52.247 kb on + strand, within GFF69at 52.248 kb on - strand, within GFF69at 52.248 kb on - strand, within GFF69at 52.327 kb on + strand, within GFF69at 52.449 kb on + strand, within GFF69at 52.449 kb on + strand, within GFF69at 52.449 kb on + strand, within GFF69at 52.559 kb on + strand, within GFF69at 52.560 kb on - strand, within GFF69at 52.560 kb on - strand, within GFF69at 52.648 kb on - strand, within GFF69at 52.648 kb on - strand, within GFF69at 52.650 kb on + strand, within GFF69at 52.651 kb on - strand, within GFF69at 52.714 kb on + strand, within GFF69at 52.719 kb on + strand, within GFF69at 52.720 kb on - strand, within GFF69at 52.720 kb on - strand, within GFF69at 52.723 kb on - strand, within GFF69at 52.828 kb on + strandat 52.828 kb on + strandat 53.031 kb on - strand, within GFF70at 53.034 kb on + strand, within GFF70at 53.034 kb on + strand, within GFF70at 53.036 kb on + strand, within GFF70at 53.146 kb on - strand, within GFF70at 53.490 kb on - strand, within GFF71at 53.730 kb on - strand, within GFF71at 53.835 kb on + strandat 54.257 kb on - strand, within GFF72

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with P22_phage 15 MOI
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51,902 - -3.6
52,001 - -1.3
52,003 + +1.5
52,003 + +0.3
52,005 + +0.4
52,005 + +0.8
52,069 + +0.8
52,156 + GFF69 0.20 +0.7
52,160 - GFF69 0.21 +0.1
52,239 + GFF69 0.30 -3.8
52,239 + GFF69 0.30 +0.4
52,239 + GFF69 0.30 -1.7
52,240 - GFF69 0.30 -1.2
52,244 - GFF69 0.31 +0.2
52,247 + GFF69 0.31 -1.7
52,248 - GFF69 0.31 +2.0
52,248 - GFF69 0.31 +0.3
52,327 + GFF69 0.41 +0.3
52,449 + GFF69 0.55 +0.5
52,449 + GFF69 0.55 +0.9
52,449 + GFF69 0.55 -1.2
52,559 + GFF69 0.68 +1.1
52,560 - GFF69 0.68 -0.8
52,560 - GFF69 0.68 +1.0
52,648 - GFF69 0.79 +0.1
52,648 - GFF69 0.79 +0.3
52,650 + GFF69 0.79 +1.7
52,651 - GFF69 0.79 -0.8
52,714 + GFF69 0.87 +0.2
52,719 + GFF69 0.87 +1.1
52,720 - GFF69 0.87 -0.9
52,720 - GFF69 0.87 -0.0
52,723 - GFF69 0.88 -0.7
52,828 + +0.2
52,828 + +1.5
53,031 - GFF70 0.39 +1.1
53,034 + GFF70 0.39 +1.3
53,034 + GFF70 0.39 +0.5
53,036 + GFF70 0.40 +0.3
53,146 - GFF70 0.60 +0.4
53,490 - GFF71 0.28 -0.0
53,730 - GFF71 0.79 +2.0
53,835 + -0.3
54,257 - GFF72 0.84 +0.1

Or see this region's nucleotide sequence