Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4813

Experiment: LB_plus_SM_buffer with P22_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4812 and GFF4813 are separated by 13 nucleotidesGFF4813 and GFF4814 overlap by 4 nucleotides GFF4812 - CRISPR-associated protein, Cse4 family, at 110,809 to 111,867 GFF4812 GFF4813 - CRISPR-associated protein, Cse2 family, at 111,881 to 112,441 GFF4813 GFF4814 - CRISPR-associated protein, Cse1 family, at 112,438 to 113,994 GFF4814 Position (kb) 111 112 113Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 110.902 kb on - strandat 110.913 kb on + strandat 110.913 kb on + strandat 110.914 kb on - strandat 110.925 kb on + strand, within GFF4812at 110.925 kb on + strand, within GFF4812at 110.925 kb on + strand, within GFF4812at 110.926 kb on - strand, within GFF4812at 111.039 kb on - strand, within GFF4812at 111.179 kb on + strand, within GFF4812at 111.180 kb on - strand, within GFF4812at 111.180 kb on - strand, within GFF4812at 111.180 kb on - strand, within GFF4812at 111.413 kb on - strand, within GFF4812at 111.555 kb on + strand, within GFF4812at 111.600 kb on - strand, within GFF4812at 111.684 kb on + strand, within GFF4812at 111.695 kb on - strand, within GFF4812at 111.710 kb on - strand, within GFF4812at 111.720 kb on + strand, within GFF4812at 111.721 kb on - strand, within GFF4812at 111.842 kb on - strandat 111.868 kb on - strandat 111.873 kb on + strandat 111.883 kb on - strandat 111.883 kb on - strandat 112.059 kb on - strand, within GFF4813at 112.119 kb on - strand, within GFF4813at 112.133 kb on + strand, within GFF4813at 112.253 kb on - strand, within GFF4813at 112.299 kb on - strand, within GFF4813at 112.346 kb on - strand, within GFF4813at 112.355 kb on + strand, within GFF4813at 112.356 kb on - strand, within GFF4813at 112.386 kb on - strandat 112.554 kb on - strandat 112.564 kb on - strandat 112.951 kb on - strand, within GFF4814at 112.963 kb on + strand, within GFF4814at 112.964 kb on - strand, within GFF4814at 113.208 kb on + strand, within GFF4814at 113.209 kb on + strand, within GFF4814at 113.210 kb on - strand, within GFF4814at 113.210 kb on - strand, within GFF4814at 113.210 kb on - strand, within GFF4814at 113.377 kb on - strand, within GFF4814

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with P22_phage 15 MOI
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110,902 - -0.4
110,913 + +1.6
110,913 + -0.7
110,914 - -0.2
110,925 + GFF4812 0.11 -0.4
110,925 + GFF4812 0.11 -2.1
110,925 + GFF4812 0.11 +0.2
110,926 - GFF4812 0.11 -0.6
111,039 - GFF4812 0.22 -0.1
111,179 + GFF4812 0.35 -1.1
111,180 - GFF4812 0.35 -0.1
111,180 - GFF4812 0.35 +0.5
111,180 - GFF4812 0.35 +1.4
111,413 - GFF4812 0.57 +0.7
111,555 + GFF4812 0.70 +2.2
111,600 - GFF4812 0.75 -1.5
111,684 + GFF4812 0.83 -0.2
111,695 - GFF4812 0.84 -2.8
111,710 - GFF4812 0.85 +0.5
111,720 + GFF4812 0.86 +0.7
111,721 - GFF4812 0.86 +0.7
111,842 - -0.9
111,868 - -0.1
111,873 + -0.4
111,883 - -2.9
111,883 - +1.7
112,059 - GFF4813 0.32 +1.9
112,119 - GFF4813 0.42 +1.6
112,133 + GFF4813 0.45 +0.0
112,253 - GFF4813 0.66 +1.6
112,299 - GFF4813 0.75 -0.8
112,346 - GFF4813 0.83 +0.3
112,355 + GFF4813 0.84 -0.8
112,356 - GFF4813 0.85 +0.7
112,386 - -1.5
112,554 - -0.4
112,564 - -0.0
112,951 - GFF4814 0.33 -0.6
112,963 + GFF4814 0.34 -0.3
112,964 - GFF4814 0.34 +0.6
113,208 + GFF4814 0.49 -1.4
113,209 + GFF4814 0.50 +0.2
113,210 - GFF4814 0.50 -0.1
113,210 - GFF4814 0.50 +0.7
113,210 - GFF4814 0.50 -0.5
113,377 - GFF4814 0.60 -0.3

Or see this region's nucleotide sequence