Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4772

Experiment: LB_plus_SM_buffer with P22_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4771 and GFF4772 are separated by 530 nucleotidesGFF4772 and GFF4773 are separated by 207 nucleotides GFF4771 - Serine/threonine specific protein phosphatase 2 (EC 3.1.3.16), at 78,554 to 79,210 GFF4771 GFF4772 - hypothetical protein, at 79,741 to 79,854 GFF4772 GFF4773 - DNA mismatch repair protein MutS, at 80,062 to 82,629 GFF4773 Position (kb) 79 80Strain fitness (log2 ratio) -3 -2 -1 0 1at 78.840 kb on + strand, within GFF4771at 78.852 kb on - strand, within GFF4771at 78.995 kb on + strand, within GFF4771at 79.033 kb on - strand, within GFF4771at 79.227 kb on + strandat 79.274 kb on + strandat 79.275 kb on - strandat 79.577 kb on + strandat 79.697 kb on + strandat 79.716 kb on + strandat 79.788 kb on + strand, within GFF4772at 79.906 kb on + strandat 79.907 kb on - strandat 80.263 kb on - strandat 80.341 kb on - strand, within GFF4773at 80.341 kb on - strand, within GFF4773at 80.391 kb on + strand, within GFF4773at 80.488 kb on - strand, within GFF4773at 80.494 kb on + strand, within GFF4773at 80.501 kb on - strand, within GFF4773at 80.606 kb on - strand, within GFF4773at 80.634 kb on - strand, within GFF4773at 80.768 kb on + strand, within GFF4773at 80.794 kb on + strand, within GFF4773at 80.798 kb on + strand, within GFF4773at 80.798 kb on + strand, within GFF4773

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with P22_phage 15 MOI
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78,840 + GFF4771 0.44 +0.2
78,852 - GFF4771 0.45 +1.2
78,995 + GFF4771 0.67 +0.3
79,033 - GFF4771 0.73 -1.0
79,227 + +1.1
79,274 + +0.8
79,275 - -0.3
79,577 + -0.3
79,697 + -0.1
79,716 + -0.7
79,788 + GFF4772 0.41 -1.3
79,906 + +0.4
79,907 - +0.1
80,263 - +0.4
80,341 - GFF4773 0.11 +0.7
80,341 - GFF4773 0.11 +0.7
80,391 + GFF4773 0.13 -0.3
80,488 - GFF4773 0.17 +1.7
80,494 + GFF4773 0.17 -0.1
80,501 - GFF4773 0.17 +0.5
80,606 - GFF4773 0.21 -0.9
80,634 - GFF4773 0.22 -0.3
80,768 + GFF4773 0.27 -1.7
80,794 + GFF4773 0.29 -0.4
80,798 + GFF4773 0.29 -0.7
80,798 + GFF4773 0.29 -2.9

Or see this region's nucleotide sequence