Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF472

Experiment: LB_plus_SM_buffer with P22_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF471 and GFF472 overlap by 17 nucleotidesGFF472 and GFF473 are separated by 52 nucleotides GFF471 - Putative lacI-family transcriptional regulator, at 192,829 to 193,836 GFF471 GFF472 - hypothetical protein, at 193,820 to 193,933 GFF472 GFF473 - Putative PQQ enzyme repeat, at 193,986 to 195,110 GFF473 Position (kb) 193 194Strain fitness (log2 ratio) -1 0 1 2 3at 193.129 kb on + strand, within GFF471at 193.130 kb on - strand, within GFF471at 193.130 kb on - strand, within GFF471at 193.130 kb on - strand, within GFF471at 193.274 kb on - strand, within GFF471at 193.572 kb on + strand, within GFF471at 193.573 kb on - strand, within GFF471at 193.683 kb on - strand, within GFF471at 193.876 kb on + strand, within GFF472at 194.043 kb on - strandat 194.043 kb on - strandat 194.047 kb on - strandat 194.047 kb on - strandat 194.047 kb on - strandat 194.079 kb on - strandat 194.116 kb on - strand, within GFF473at 194.211 kb on + strand, within GFF473at 194.211 kb on + strand, within GFF473at 194.280 kb on + strand, within GFF473at 194.281 kb on - strand, within GFF473at 194.325 kb on - strand, within GFF473at 194.325 kb on - strand, within GFF473at 194.328 kb on + strand, within GFF473at 194.373 kb on + strand, within GFF473at 194.374 kb on - strand, within GFF473at 194.664 kb on - strand, within GFF473at 194.838 kb on - strand, within GFF473at 194.885 kb on + strand, within GFF473at 194.924 kb on + strand, within GFF473

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with P22_phage 15 MOI
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193,129 + GFF471 0.30 +0.1
193,130 - GFF471 0.30 -0.3
193,130 - GFF471 0.30 -0.9
193,130 - GFF471 0.30 -0.8
193,274 - GFF471 0.44 -1.7
193,572 + GFF471 0.74 +0.4
193,573 - GFF471 0.74 +1.5
193,683 - GFF471 0.85 +2.9
193,876 + GFF472 0.49 -0.7
194,043 - +0.6
194,043 - +0.8
194,047 - -0.1
194,047 - +0.1
194,047 - +0.3
194,079 - -0.0
194,116 - GFF473 0.12 -0.0
194,211 + GFF473 0.20 -0.0
194,211 + GFF473 0.20 +0.7
194,280 + GFF473 0.26 -1.1
194,281 - GFF473 0.26 -1.1
194,325 - GFF473 0.30 +0.9
194,325 - GFF473 0.30 -0.0
194,328 + GFF473 0.30 +0.1
194,373 + GFF473 0.34 +1.2
194,374 - GFF473 0.34 -1.3
194,664 - GFF473 0.60 +0.5
194,838 - GFF473 0.76 +0.5
194,885 + GFF473 0.80 -0.7
194,924 + GFF473 0.83 +2.3

Or see this region's nucleotide sequence