Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF456

Experiment: LB_plus_SM_buffer with P22_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF454 and GFF455 are separated by 288 nucleotidesGFF455 and GFF456 are separated by 157 nucleotidesGFF456 and GFF457 are separated by 149 nucleotidesGFF457 and GFF458 are separated by 49 nucleotides GFF454 - Cold shock protein CspA, at 176,427 to 176,639 GFF454 GFF455 - FIG00638451: hypothetical protein, at 176,928 to 177,218 GFF455 GFF456 - hypothetical protein, at 177,376 to 177,507 GFF456 GFF457 - probable exported protein YPO4070, at 177,657 to 178,367 GFF457 GFF458 - 2-ketoaldonate reductase, broad specificity (EC 1.1.1.215) (EC 1.1.1.-), at 178,417 to 179,391 GFF458 Position (kb) 177 178Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 176.559 kb on - strand, within GFF454at 176.577 kb on - strand, within GFF454at 176.580 kb on - strand, within GFF454at 176.614 kb on - strand, within GFF454at 176.640 kb on - strandat 176.640 kb on - strandat 176.645 kb on - strandat 176.648 kb on - strandat 176.768 kb on - strandat 176.848 kb on + strandat 176.894 kb on - strandat 176.949 kb on + strandat 176.950 kb on - strandat 177.097 kb on - strand, within GFF455at 177.209 kb on + strandat 177.391 kb on - strand, within GFF456at 177.434 kb on + strand, within GFF456at 177.529 kb on + strandat 177.653 kb on - strandat 177.710 kb on - strandat 177.710 kb on - strandat 177.710 kb on - strandat 177.719 kb on + strandat 177.864 kb on + strand, within GFF457at 177.876 kb on + strand, within GFF457at 177.876 kb on + strand, within GFF457at 177.876 kb on + strand, within GFF457at 177.876 kb on + strand, within GFF457at 177.877 kb on - strand, within GFF457at 177.877 kb on - strand, within GFF457at 177.967 kb on - strand, within GFF457at 178.206 kb on + strand, within GFF457at 178.206 kb on + strand, within GFF457at 178.284 kb on + strand, within GFF457at 178.284 kb on + strand, within GFF457at 178.329 kb on - strandat 178.352 kb on - strandat 178.483 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with P22_phage 15 MOI
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176,559 - GFF454 0.62 +1.7
176,577 - GFF454 0.70 -1.1
176,580 - GFF454 0.72 -0.8
176,614 - GFF454 0.88 -0.5
176,640 - -0.1
176,640 - -0.1
176,645 - -2.7
176,648 - +0.3
176,768 - -1.0
176,848 + +0.1
176,894 - +0.6
176,949 + -1.1
176,950 - -0.6
177,097 - GFF455 0.58 +0.7
177,209 + -1.3
177,391 - GFF456 0.11 +0.2
177,434 + GFF456 0.44 +0.4
177,529 + +2.9
177,653 - +0.5
177,710 - +2.5
177,710 - +0.7
177,710 - +1.2
177,719 + -0.1
177,864 + GFF457 0.29 -3.0
177,876 + GFF457 0.31 +0.8
177,876 + GFF457 0.31 +0.8
177,876 + GFF457 0.31 +0.8
177,876 + GFF457 0.31 -0.1
177,877 - GFF457 0.31 -0.3
177,877 - GFF457 0.31 -0.4
177,967 - GFF457 0.44 +0.7
178,206 + GFF457 0.77 -0.3
178,206 + GFF457 0.77 -0.6
178,284 + GFF457 0.88 +0.4
178,284 + GFF457 0.88 -3.0
178,329 - +0.4
178,352 - +0.2
178,483 - -0.3

Or see this region's nucleotide sequence