Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4426

Experiment: LB_plus_SM_buffer with P22_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4425 and GFF4426 are separated by 65 nucleotidesGFF4426 and GFF4427 are separated by 95 nucleotides GFF4425 - 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), at 210,352 to 211,230 GFF4425 GFF4426 - Probable metabolite transport protein, at 211,296 to 212,543 GFF4426 GFF4427 - Allantoin permease, at 212,639 to 214,093 GFF4427 Position (kb) 211 212 213Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 210.337 kb on + strandat 210.691 kb on + strand, within GFF4425at 210.750 kb on + strand, within GFF4425at 210.786 kb on + strand, within GFF4425at 211.190 kb on + strandat 211.219 kb on - strandat 211.283 kb on - strandat 211.380 kb on + strandat 211.435 kb on + strand, within GFF4426at 211.436 kb on - strand, within GFF4426at 211.614 kb on + strand, within GFF4426at 211.615 kb on - strand, within GFF4426at 211.616 kb on + strand, within GFF4426at 211.616 kb on + strand, within GFF4426at 211.818 kb on + strand, within GFF4426at 211.818 kb on + strand, within GFF4426at 211.840 kb on + strand, within GFF4426at 211.841 kb on - strand, within GFF4426at 212.008 kb on - strand, within GFF4426at 212.017 kb on + strand, within GFF4426at 212.037 kb on + strand, within GFF4426at 212.171 kb on + strand, within GFF4426at 212.261 kb on - strand, within GFF4426at 212.423 kb on - strandat 212.504 kb on - strandat 212.964 kb on + strand, within GFF4427at 212.989 kb on + strand, within GFF4427at 213.455 kb on - strand, within GFF4427at 213.455 kb on - strand, within GFF4427at 213.456 kb on + strand, within GFF4427at 213.457 kb on - strand, within GFF4427at 213.500 kb on - strand, within GFF4427

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with P22_phage 15 MOI
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210,337 + -0.3
210,691 + GFF4425 0.39 -1.9
210,750 + GFF4425 0.45 -2.1
210,786 + GFF4425 0.49 -1.5
211,190 + +0.4
211,219 - -2.2
211,283 - -1.6
211,380 + -0.8
211,435 + GFF4426 0.11 -2.7
211,436 - GFF4426 0.11 -0.3
211,614 + GFF4426 0.25 -1.4
211,615 - GFF4426 0.26 -2.2
211,616 + GFF4426 0.26 -0.6
211,616 + GFF4426 0.26 -1.0
211,818 + GFF4426 0.42 -0.3
211,818 + GFF4426 0.42 +0.6
211,840 + GFF4426 0.44 -3.0
211,841 - GFF4426 0.44 -2.5
212,008 - GFF4426 0.57 +0.6
212,017 + GFF4426 0.58 -1.7
212,037 + GFF4426 0.59 -3.5
212,171 + GFF4426 0.70 -1.5
212,261 - GFF4426 0.77 -2.4
212,423 - -0.4
212,504 - -3.0
212,964 + GFF4427 0.22 -0.3
212,989 + GFF4427 0.24 -0.7
213,455 - GFF4427 0.56 -1.4
213,455 - GFF4427 0.56 -3.0
213,456 + GFF4427 0.56 +2.7
213,457 - GFF4427 0.56 -0.1
213,500 - GFF4427 0.59 +0.5

Or see this region's nucleotide sequence