Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3133

Experiment: LB_plus_SM_buffer with P22_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3132 and GFF3133 are separated by 44 nucleotidesGFF3133 and GFF3134 are separated by 73 nucleotides GFF3132 - TRAP-type C4-dicarboxylate transport system, large permease component, at 138,250 to 139,557 GFF3132 GFF3133 - Putative cell division protein precursor, at 139,602 to 141,014 GFF3133 GFF3134 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 141,088 to 141,825 GFF3134 Position (kb) 139 140 141 142Strain fitness (log2 ratio) -2 -1 0 1 2 3at 138.648 kb on - strand, within GFF3132at 138.851 kb on - strand, within GFF3132at 138.868 kb on + strand, within GFF3132at 138.945 kb on - strand, within GFF3132at 139.016 kb on - strand, within GFF3132at 139.101 kb on + strand, within GFF3132at 139.748 kb on + strand, within GFF3133at 139.890 kb on - strand, within GFF3133at 139.890 kb on - strand, within GFF3133at 140.112 kb on + strand, within GFF3133at 140.113 kb on - strand, within GFF3133at 140.486 kb on - strand, within GFF3133at 140.554 kb on + strand, within GFF3133at 140.744 kb on - strand, within GFF3133at 140.744 kb on - strand, within GFF3133at 140.744 kb on - strand, within GFF3133at 141.015 kb on - strandat 141.015 kb on - strandat 141.016 kb on + strandat 141.017 kb on - strandat 141.017 kb on - strandat 141.017 kb on - strandat 141.017 kb on - strandat 141.017 kb on - strandat 141.027 kb on + strandat 141.028 kb on - strandat 141.080 kb on - strandat 141.097 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with P22_phage 15 MOI
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138,648 - GFF3132 0.30 +0.4
138,851 - GFF3132 0.46 +1.9
138,868 + GFF3132 0.47 +0.4
138,945 - GFF3132 0.53 +0.8
139,016 - GFF3132 0.59 -0.8
139,101 + GFF3132 0.65 -0.9
139,748 + GFF3133 0.10 +3.2
139,890 - GFF3133 0.20 +1.4
139,890 - GFF3133 0.20 -2.0
140,112 + GFF3133 0.36 +2.8
140,113 - GFF3133 0.36 +2.0
140,486 - GFF3133 0.63 +2.5
140,554 + GFF3133 0.67 +1.6
140,744 - GFF3133 0.81 +0.1
140,744 - GFF3133 0.81 -1.4
140,744 - GFF3133 0.81 +0.8
141,015 - +1.6
141,015 - +0.8
141,016 + +1.8
141,017 - +1.2
141,017 - +0.2
141,017 - -1.0
141,017 - +0.8
141,017 - -0.2
141,027 + +1.3
141,028 - +1.4
141,080 - -2.3
141,097 - -0.7

Or see this region's nucleotide sequence