Experiment: LB_plus_SM_buffer with P22_phage 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2966 and GFF2967 are separated by 117 nucleotides GFF2967 and GFF2968 are separated by 5 nucleotides GFF2968 and GFF2969 are separated by 262 nucleotides
GFF2966 - Transcriptional regulator NanR, at 50,623 to 51,405
GFF2966
GFF2967 - ClpXP protease specificity-enhancing factor / Stringent starvation protein B, at 51,523 to 52,023
GFF2967
GFF2968 - Stringent starvation protein A, at 52,029 to 52,667
GFF2968
GFF2969 - FIG074102: hypothetical protein, at 52,930 to 53,724
GFF2969
Position (kb) 52
53 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 51.233 kb on - strand, within GFF2966 at 51.233 kb on - strand, within GFF2966 at 51.354 kb on + strand at 51.440 kb on - strand at 51.448 kb on + strand at 51.449 kb on - strand at 51.673 kb on + strand, within GFF2967 at 51.891 kb on - strand, within GFF2967 at 51.891 kb on - strand, within GFF2967 at 52.110 kb on - strand, within GFF2968 at 52.112 kb on - strand, within GFF2968 at 52.189 kb on + strand, within GFF2968 at 52.335 kb on - strand, within GFF2968 at 52.565 kb on + strand, within GFF2968 at 52.605 kb on - strand at 52.606 kb on + strand at 52.606 kb on + strand at 52.607 kb on - strand at 52.607 kb on - strand at 52.607 kb on - strand at 52.607 kb on - strand at 52.682 kb on - strand at 52.684 kb on - strand at 52.732 kb on - strand at 52.820 kb on + strand at 52.820 kb on + strand at 52.821 kb on - strand at 52.880 kb on + strand at 52.915 kb on - strand at 52.931 kb on + strand at 52.931 kb on + strand at 52.940 kb on - strand at 53.019 kb on + strand, within GFF2969 at 53.020 kb on - strand, within GFF2969 at 53.049 kb on + strand, within GFF2969 at 53.160 kb on + strand, within GFF2969 at 53.161 kb on - strand, within GFF2969 at 53.174 kb on + strand, within GFF2969 at 53.177 kb on + strand, within GFF2969 at 53.177 kb on + strand, within GFF2969 at 53.178 kb on - strand, within GFF2969 at 53.185 kb on - strand, within GFF2969 at 53.248 kb on + strand, within GFF2969 at 53.276 kb on + strand, within GFF2969 at 53.325 kb on - strand, within GFF2969 at 53.382 kb on + strand, within GFF2969 at 53.538 kb on - strand, within GFF2969 at 53.549 kb on + strand, within GFF2969 at 53.624 kb on - strand, within GFF2969
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with P22_phage 15 MOI remove 51,233 - GFF2966 0.78 -0.0 51,233 - GFF2966 0.78 -1.6 51,354 + +1.1 51,440 - -2.3 51,448 + -0.8 51,449 - +0.5 51,673 + GFF2967 0.30 +0.0 51,891 - GFF2967 0.73 +2.5 51,891 - GFF2967 0.73 +2.4 52,110 - GFF2968 0.13 -0.6 52,112 - GFF2968 0.13 +2.0 52,189 + GFF2968 0.25 +3.2 52,335 - GFF2968 0.48 +3.4 52,565 + GFF2968 0.84 +2.0 52,605 - +3.2 52,606 + +1.8 52,606 + +3.3 52,607 - +1.0 52,607 - +0.8 52,607 - +3.9 52,607 - +2.9 52,682 - +1.1 52,684 - -0.8 52,732 - +1.8 52,820 + -0.6 52,820 + -1.1 52,821 - +1.0 52,880 + +1.0 52,915 - +0.3 52,931 + -1.2 52,931 + +0.8 52,940 - +0.7 53,019 + GFF2969 0.11 +0.4 53,020 - GFF2969 0.11 -0.5 53,049 + GFF2969 0.15 +1.8 53,160 + GFF2969 0.29 -3.8 53,161 - GFF2969 0.29 -1.4 53,174 + GFF2969 0.31 +0.4 53,177 + GFF2969 0.31 +2.1 53,177 + GFF2969 0.31 +0.1 53,178 - GFF2969 0.31 -0.6 53,185 - GFF2969 0.32 +1.8 53,248 + GFF2969 0.40 -0.2 53,276 + GFF2969 0.44 -0.9 53,325 - GFF2969 0.50 +1.9 53,382 + GFF2969 0.57 +0.7 53,538 - GFF2969 0.76 +0.1 53,549 + GFF2969 0.78 -1.9 53,624 - GFF2969 0.87 +1.2
Or see this region's nucleotide sequence