Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2688

Experiment: LB_plus_SM_buffer with P22_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2687 and GFF2688 are separated by 225 nucleotidesGFF2688 and GFF2689 overlap by 4 nucleotidesGFF2689 and GFF2690 overlap by 14 nucleotides GFF2687 - Psp operon transcriptional activator, at 208,189 to 209,184 GFF2687 GFF2688 - Peptide transport periplasmic protein SapA, at 209,410 to 210,945 GFF2688 GFF2689 - Peptide transport system permease protein SapB, at 210,942 to 211,907 GFF2689 GFF2690 - Peptide transport system permease protein SapC, at 211,894 to 212,784 GFF2690 Position (kb) 209 210 211Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 208.579 kb on + strand, within GFF2687at 208.634 kb on + strand, within GFF2687at 208.725 kb on - strand, within GFF2687at 208.805 kb on + strand, within GFF2687at 208.805 kb on + strand, within GFF2687at 208.805 kb on + strand, within GFF2687at 208.806 kb on - strand, within GFF2687at 208.862 kb on - strand, within GFF2687at 208.875 kb on + strand, within GFF2687at 209.143 kb on + strandat 209.344 kb on - strandat 209.442 kb on + strandat 209.527 kb on - strandat 209.530 kb on + strandat 209.731 kb on - strand, within GFF2688at 209.748 kb on + strand, within GFF2688at 209.753 kb on + strand, within GFF2688at 209.753 kb on + strand, within GFF2688at 209.860 kb on + strand, within GFF2688at 209.860 kb on + strand, within GFF2688at 210.376 kb on + strand, within GFF2688at 210.702 kb on + strand, within GFF2688at 210.833 kb on + strandat 210.876 kb on - strandat 211.487 kb on + strand, within GFF2689at 211.559 kb on + strand, within GFF2689at 211.581 kb on + strand, within GFF2689at 211.782 kb on + strand, within GFF2689

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with P22_phage 15 MOI
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208,579 + GFF2687 0.39 -0.7
208,634 + GFF2687 0.45 -1.0
208,725 - GFF2687 0.54 -1.3
208,805 + GFF2687 0.62 -0.1
208,805 + GFF2687 0.62 -2.3
208,805 + GFF2687 0.62 -0.3
208,806 - GFF2687 0.62 +2.0
208,862 - GFF2687 0.68 -1.0
208,875 + GFF2687 0.69 +0.0
209,143 + -0.2
209,344 - -1.6
209,442 + +1.0
209,527 - +1.0
209,530 + -1.0
209,731 - GFF2688 0.21 -2.0
209,748 + GFF2688 0.22 -1.3
209,753 + GFF2688 0.22 -0.3
209,753 + GFF2688 0.22 +0.0
209,860 + GFF2688 0.29 +0.0
209,860 + GFF2688 0.29 -1.6
210,376 + GFF2688 0.63 -0.3
210,702 + GFF2688 0.84 -1.7
210,833 + +0.7
210,876 - -1.3
211,487 + GFF2689 0.56 -1.6
211,559 + GFF2689 0.64 -1.6
211,581 + GFF2689 0.66 +1.2
211,782 + GFF2689 0.87 -3.1

Or see this region's nucleotide sequence