Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1668

Experiment: LB_plus_SM_buffer with P22_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1666 and GFF1667 are separated by 46 nucleotidesGFF1667 and GFF1668 are separated by 43 nucleotidesGFF1668 and GFF1669 are separated by 20 nucleotides GFF1666 - Methyl-accepting chemotaxis protein, at 51,177 to 52,838 GFF1666 GFF1667 - hypothetical protein, at 52,885 to 53,031 GFF1667 GFF1668 - Positive regulator of CheA protein activity (CheW), at 53,075 to 53,578 GFF1668 GFF1669 - Signal transduction histidine kinase CheA (EC 2.7.3.-), at 53,599 to 55,608 GFF1669 Position (kb) 53 54Strain fitness (log2 ratio) -2 -1 0 1at 52.336 kb on + strand, within GFF1666at 52.403 kb on + strand, within GFF1666at 52.428 kb on - strand, within GFF1666at 52.776 kb on + strandat 52.839 kb on - strandat 53.030 kb on - strandat 53.274 kb on - strand, within GFF1668at 53.402 kb on - strand, within GFF1668at 53.429 kb on - strand, within GFF1668at 53.513 kb on - strand, within GFF1668at 53.581 kb on + strandat 53.581 kb on + strandat 53.582 kb on - strandat 53.620 kb on - strandat 53.724 kb on - strandat 54.123 kb on + strand, within GFF1669at 54.325 kb on - strand, within GFF1669at 54.325 kb on - strand, within GFF1669at 54.573 kb on - strand, within GFF1669

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with P22_phage 15 MOI
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52,336 + GFF1666 0.70 -0.2
52,403 + GFF1666 0.74 -0.8
52,428 - GFF1666 0.75 -0.4
52,776 + -0.3
52,839 - -1.6
53,030 - -0.2
53,274 - GFF1668 0.39 +0.0
53,402 - GFF1668 0.65 -2.0
53,429 - GFF1668 0.70 +0.7
53,513 - GFF1668 0.87 -0.6
53,581 + +0.4
53,581 + +0.4
53,582 - -0.4
53,620 - -0.7
53,724 - +0.5
54,123 + GFF1669 0.26 -2.3
54,325 - GFF1669 0.36 -0.1
54,325 - GFF1669 0.36 -2.3
54,573 - GFF1669 0.48 -1.3

Or see this region's nucleotide sequence