Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1655

Experiment: LB_plus_SM_buffer with P22_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1653 and GFF1654 are separated by 19 nucleotidesGFF1654 and GFF1655 are separated by 104 nucleotidesGFF1655 and GFF1656 are separated by 15 nucleotides GFF1653 - Cytoplasmic copper homeostasis protein CutC, at 37,446 to 38,192 GFF1653 GFF1654 - Protein yecM, at 38,212 to 38,781 GFF1654 GFF1655 - hypothetical protein, at 38,886 to 39,002 GFF1655 GFF1656 - Arginyl-tRNA synthetase (EC 6.1.1.19), at 39,018 to 40,751 GFF1656 Position (kb) 38 39 40Strain fitness (log2 ratio) -2 -1 0 1 2at 37.886 kb on + strand, within GFF1653at 38.031 kb on + strand, within GFF1653at 38.042 kb on + strand, within GFF1653at 38.046 kb on - strand, within GFF1653at 38.065 kb on - strand, within GFF1653at 38.185 kb on - strandat 38.301 kb on + strand, within GFF1654at 38.347 kb on - strand, within GFF1654at 38.367 kb on + strand, within GFF1654at 38.571 kb on + strand, within GFF1654at 38.584 kb on + strand, within GFF1654at 38.585 kb on - strand, within GFF1654at 38.865 kb on - strandat 38.876 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with P22_phage 15 MOI
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37,886 + GFF1653 0.59 -0.3
38,031 + GFF1653 0.78 +0.6
38,042 + GFF1653 0.80 -0.1
38,046 - GFF1653 0.80 -0.3
38,065 - GFF1653 0.83 -2.5
38,185 - +2.3
38,301 + GFF1654 0.16 +0.4
38,347 - GFF1654 0.24 -0.1
38,367 + GFF1654 0.27 -0.9
38,571 + GFF1654 0.63 +0.1
38,584 + GFF1654 0.65 +0.1
38,585 - GFF1654 0.65 -0.7
38,865 - -2.5
38,876 - -0.8

Or see this region's nucleotide sequence