Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1417

Experiment: LB_plus_SM_buffer with P22_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1415 and GFF1416 are separated by 98 nucleotidesGFF1416 and GFF1417 are separated by 246 nucleotidesGFF1417 and GFF1418 are separated by 87 nucleotides GFF1415 - UPF0337 protein yjbJ, at 61,620 to 61,832 GFF1415 GFF1416 - Zinc uptake regulation protein ZUR, at 61,931 to 62,446 GFF1416 GFF1417 - FIG01200701: possible membrane protein, at 62,693 to 64,003 GFF1417 GFF1418 - tRNA dihydrouridine synthase A (EC 1.-.-.-), at 64,091 to 65,089 GFF1418 Position (kb) 62 63 64 65Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 61.742 kb on - strand, within GFF1415at 61.834 kb on - strandat 61.854 kb on + strandat 61.854 kb on + strandat 61.855 kb on - strandat 61.882 kb on + strandat 61.882 kb on + strandat 61.907 kb on - strandat 62.000 kb on + strand, within GFF1416at 62.000 kb on + strand, within GFF1416at 62.001 kb on - strand, within GFF1416at 62.001 kb on - strand, within GFF1416at 62.007 kb on - strand, within GFF1416at 62.044 kb on + strand, within GFF1416at 62.044 kb on + strand, within GFF1416at 62.044 kb on + strand, within GFF1416at 62.045 kb on - strand, within GFF1416at 62.045 kb on - strand, within GFF1416at 62.045 kb on - strand, within GFF1416at 62.193 kb on + strand, within GFF1416at 62.194 kb on - strand, within GFF1416at 62.197 kb on + strand, within GFF1416at 62.198 kb on - strand, within GFF1416at 62.198 kb on - strand, within GFF1416at 62.257 kb on - strand, within GFF1416at 62.448 kb on + strandat 62.448 kb on + strandat 62.449 kb on - strandat 62.449 kb on - strandat 62.449 kb on - strandat 62.481 kb on + strandat 62.482 kb on - strandat 62.487 kb on - strandat 62.500 kb on + strandat 62.567 kb on + strandat 62.567 kb on + strandat 62.569 kb on + strandat 62.569 kb on + strandat 62.570 kb on - strandat 62.574 kb on - strandat 62.590 kb on - strandat 62.592 kb on - strandat 62.676 kb on - strandat 62.678 kb on + strandat 62.679 kb on - strandat 62.847 kb on + strand, within GFF1417at 62.848 kb on - strand, within GFF1417at 62.887 kb on + strand, within GFF1417at 62.979 kb on - strand, within GFF1417at 62.981 kb on + strand, within GFF1417at 62.981 kb on + strand, within GFF1417at 62.982 kb on - strand, within GFF1417at 62.982 kb on - strand, within GFF1417at 63.089 kb on + strand, within GFF1417at 63.186 kb on - strand, within GFF1417at 63.357 kb on + strand, within GFF1417at 63.358 kb on - strand, within GFF1417at 63.455 kb on - strand, within GFF1417at 63.458 kb on + strand, within GFF1417at 63.500 kb on - strand, within GFF1417at 63.629 kb on - strand, within GFF1417at 63.633 kb on - strand, within GFF1417at 63.633 kb on - strand, within GFF1417at 63.633 kb on - strand, within GFF1417at 63.633 kb on - strand, within GFF1417at 63.646 kb on + strand, within GFF1417at 63.646 kb on + strand, within GFF1417at 63.677 kb on - strand, within GFF1417at 63.677 kb on - strand, within GFF1417at 63.677 kb on - strand, within GFF1417at 63.681 kb on - strand, within GFF1417at 63.775 kb on + strand, within GFF1417at 63.797 kb on + strand, within GFF1417at 63.797 kb on + strand, within GFF1417at 63.940 kb on - strandat 63.989 kb on - strandat 63.989 kb on - strandat 63.989 kb on - strandat 64.049 kb on - strandat 64.127 kb on + strandat 64.147 kb on + strandat 64.253 kb on - strand, within GFF1418at 64.274 kb on - strand, within GFF1418at 64.365 kb on - strand, within GFF1418at 64.506 kb on + strand, within GFF1418at 64.541 kb on + strand, within GFF1418at 64.541 kb on + strand, within GFF1418at 64.541 kb on + strand, within GFF1418at 64.541 kb on + strand, within GFF1418at 64.542 kb on - strand, within GFF1418at 64.542 kb on - strand, within GFF1418at 64.898 kb on + strand, within GFF1418at 64.898 kb on + strand, within GFF1418at 64.898 kb on + strand, within GFF1418at 64.899 kb on - strand, within GFF1418at 64.899 kb on - strand, within GFF1418at 64.907 kb on - strand, within GFF1418at 64.934 kb on + strand, within GFF1418

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with P22_phage 15 MOI
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61,742 - GFF1415 0.57 +0.0
61,834 - +1.8
61,854 + +1.8
61,854 + -1.2
61,855 - -0.2
61,882 + -0.6
61,882 + +0.5
61,907 - +0.2
62,000 + GFF1416 0.13 -1.0
62,000 + GFF1416 0.13 +1.1
62,001 - GFF1416 0.14 +0.6
62,001 - GFF1416 0.14 -1.7
62,007 - GFF1416 0.15 +1.3
62,044 + GFF1416 0.22 +0.4
62,044 + GFF1416 0.22 -3.6
62,044 + GFF1416 0.22 +0.3
62,045 - GFF1416 0.22 +1.4
62,045 - GFF1416 0.22 +1.2
62,045 - GFF1416 0.22 -0.3
62,193 + GFF1416 0.51 -0.1
62,194 - GFF1416 0.51 +0.8
62,197 + GFF1416 0.52 -2.9
62,198 - GFF1416 0.52 +0.1
62,198 - GFF1416 0.52 -2.1
62,257 - GFF1416 0.63 +0.5
62,448 + +0.8
62,448 + +0.2
62,449 - +0.2
62,449 - -0.5
62,449 - -0.4
62,481 + -1.6
62,482 - +1.0
62,487 - -0.6
62,500 + -3.7
62,567 + +0.1
62,567 + +0.7
62,569 + -0.3
62,569 + -0.3
62,570 - +2.2
62,574 - +0.5
62,590 - +0.2
62,592 - -0.3
62,676 - -1.7
62,678 + +0.9
62,679 - +0.4
62,847 + GFF1417 0.12 +0.9
62,848 - GFF1417 0.12 -1.0
62,887 + GFF1417 0.15 +1.0
62,979 - GFF1417 0.22 +0.3
62,981 + GFF1417 0.22 -0.7
62,981 + GFF1417 0.22 +0.2
62,982 - GFF1417 0.22 -0.9
62,982 - GFF1417 0.22 -3.7
63,089 + GFF1417 0.30 +0.1
63,186 - GFF1417 0.38 -1.7
63,357 + GFF1417 0.51 +0.9
63,358 - GFF1417 0.51 +2.0
63,455 - GFF1417 0.58 -2.9
63,458 + GFF1417 0.58 -0.4
63,500 - GFF1417 0.62 -2.3
63,629 - GFF1417 0.71 -0.6
63,633 - GFF1417 0.72 -0.9
63,633 - GFF1417 0.72 -1.2
63,633 - GFF1417 0.72 -0.4
63,633 - GFF1417 0.72 +1.7
63,646 + GFF1417 0.73 +0.4
63,646 + GFF1417 0.73 -2.3
63,677 - GFF1417 0.75 -0.6
63,677 - GFF1417 0.75 +0.5
63,677 - GFF1417 0.75 -0.7
63,681 - GFF1417 0.75 -0.1
63,775 + GFF1417 0.83 -0.8
63,797 + GFF1417 0.84 +0.8
63,797 + GFF1417 0.84 -0.1
63,940 - -0.5
63,989 - -0.6
63,989 - +0.4
63,989 - -2.1
64,049 - +0.2
64,127 + -0.4
64,147 + -0.7
64,253 - GFF1418 0.16 -0.2
64,274 - GFF1418 0.18 -3.4
64,365 - GFF1418 0.27 +2.2
64,506 + GFF1418 0.42 +0.3
64,541 + GFF1418 0.45 -0.8
64,541 + GFF1418 0.45 -3.0
64,541 + GFF1418 0.45 -0.0
64,541 + GFF1418 0.45 -0.2
64,542 - GFF1418 0.45 +0.1
64,542 - GFF1418 0.45 -0.0
64,898 + GFF1418 0.81 +0.8
64,898 + GFF1418 0.81 -0.2
64,898 + GFF1418 0.81 -0.2
64,899 - GFF1418 0.81 +0.8
64,899 - GFF1418 0.81 -0.6
64,907 - GFF1418 0.82 +0.9
64,934 + GFF1418 0.84 +0.9

Or see this region's nucleotide sequence