Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1372

Experiment: LB_plus_SM_buffer with P22_phage 15 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1371 and GFF1372 are separated by 2 nucleotidesGFF1372 and GFF1373 overlap by 8 nucleotides GFF1371 - putative phage tail fiber protein H, at 20,572 to 22,317 GFF1371 GFF1372 - Putative phage tail protein, at 22,320 to 22,952 GFF1372 GFF1373 - Phage baseplate, at 22,945 to 24,060 GFF1373 Position (kb) 22 23Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 21.364 kb on - strand, within GFF1371at 21.364 kb on - strand, within GFF1371at 21.364 kb on - strand, within GFF1371at 21.463 kb on - strand, within GFF1371at 21.531 kb on + strand, within GFF1371at 21.531 kb on + strand, within GFF1371at 21.532 kb on - strand, within GFF1371at 21.532 kb on - strand, within GFF1371at 21.532 kb on - strand, within GFF1371at 21.630 kb on + strand, within GFF1371at 21.636 kb on + strand, within GFF1371at 21.637 kb on - strand, within GFF1371at 21.637 kb on - strand, within GFF1371at 21.637 kb on - strand, within GFF1371at 21.637 kb on - strand, within GFF1371at 21.694 kb on - strand, within GFF1371at 21.949 kb on - strand, within GFF1371at 22.058 kb on + strand, within GFF1371at 22.059 kb on - strand, within GFF1371at 22.135 kb on - strand, within GFF1371at 22.238 kb on - strandat 22.476 kb on - strand, within GFF1372at 22.660 kb on - strand, within GFF1372at 22.699 kb on + strand, within GFF1372at 22.704 kb on - strand, within GFF1372at 22.728 kb on + strand, within GFF1372at 22.782 kb on + strand, within GFF1372at 22.840 kb on + strand, within GFF1372at 22.841 kb on - strand, within GFF1372at 23.049 kb on - strandat 23.065 kb on + strand, within GFF1373at 23.185 kb on - strand, within GFF1373at 23.236 kb on - strand, within GFF1373at 23.442 kb on - strand, within GFF1373at 23.488 kb on - strand, within GFF1373at 23.488 kb on - strand, within GFF1373at 23.488 kb on - strand, within GFF1373at 23.488 kb on - strand, within GFF1373at 23.558 kb on + strand, within GFF1373at 23.644 kb on + strand, within GFF1373at 23.645 kb on - strand, within GFF1373

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with P22_phage 15 MOI
remove
21,364 - GFF1371 0.45 -0.1
21,364 - GFF1371 0.45 -0.2
21,364 - GFF1371 0.45 -0.2
21,463 - GFF1371 0.51 +0.2
21,531 + GFF1371 0.55 +1.8
21,531 + GFF1371 0.55 +0.1
21,532 - GFF1371 0.55 +0.4
21,532 - GFF1371 0.55 +1.0
21,532 - GFF1371 0.55 +0.4
21,630 + GFF1371 0.61 -0.1
21,636 + GFF1371 0.61 -2.8
21,637 - GFF1371 0.61 -1.1
21,637 - GFF1371 0.61 -2.5
21,637 - GFF1371 0.61 -0.3
21,637 - GFF1371 0.61 +1.8
21,694 - GFF1371 0.64 -0.0
21,949 - GFF1371 0.79 -2.0
22,058 + GFF1371 0.85 -0.6
22,059 - GFF1371 0.85 +1.3
22,135 - GFF1371 0.90 +0.2
22,238 - +0.6
22,476 - GFF1372 0.25 -2.5
22,660 - GFF1372 0.54 -0.6
22,699 + GFF1372 0.60 -0.8
22,704 - GFF1372 0.61 -1.2
22,728 + GFF1372 0.64 +1.6
22,782 + GFF1372 0.73 -1.0
22,840 + GFF1372 0.82 -0.6
22,841 - GFF1372 0.82 -1.4
23,049 - +1.0
23,065 + GFF1373 0.11 -1.9
23,185 - GFF1373 0.22 +1.0
23,236 - GFF1373 0.26 -0.5
23,442 - GFF1373 0.45 +0.8
23,488 - GFF1373 0.49 +1.8
23,488 - GFF1373 0.49 -1.0
23,488 - GFF1373 0.49 +2.5
23,488 - GFF1373 0.49 -0.3
23,558 + GFF1373 0.55 -1.3
23,644 + GFF1373 0.63 +0.8
23,645 - GFF1373 0.63 +1.2

Or see this region's nucleotide sequence