Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1155

Experiment: LB_plus_SM_buffer with P22_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1154 and GFF1155 are separated by 362 nucleotidesGFF1155 and GFF1156 are separated by 14 nucleotidesGFF1156 and GFF1157 are separated by 21 nucleotidesGFF1157 and GFF1158 overlap by 14 nucleotides GFF1154 - IncF plasmid conjugative transfer regulator TraJ, at 8,186 to 8,557 GFF1154 GFF1155 - IncF plasmid conjugative transfer pilin protein TraA, at 8,920 to 9,282 GFF1155 GFF1156 - IncF plasmid conjugative transfer pilus assembly protein TraL, at 9,297 to 9,608 GFF1156 GFF1157 - IncF plasmid conjugative transfer pilus assembly protein TraE, at 9,630 to 10,196 GFF1157 GFF1158 - IncF plasmid conjugative transfer pilus assembly protein TraK, at 10,183 to 10,923 GFF1158 Position (kb) 8 9 10Strain fitness (log2 ratio) -3 -2 -1 0 1at 7.946 kb on - strandat 8.021 kb on - strandat 8.063 kb on - strandat 8.067 kb on - strandat 8.068 kb on + strandat 8.877 kb on - strandat 8.919 kb on + strandat 8.982 kb on + strand, within GFF1155at 8.982 kb on + strand, within GFF1155at 8.982 kb on + strand, within GFF1155at 9.194 kb on - strand, within GFF1155at 9.194 kb on - strand, within GFF1155at 9.261 kb on + strandat 9.290 kb on + strandat 9.327 kb on + strandat 9.389 kb on - strand, within GFF1156at 9.537 kb on - strand, within GFF1156at 9.537 kb on - strand, within GFF1156at 9.602 kb on + strandat 9.740 kb on + strand, within GFF1157at 9.783 kb on - strand, within GFF1157at 9.783 kb on - strand, within GFF1157at 9.791 kb on + strand, within GFF1157at 9.834 kb on + strand, within GFF1157at 9.835 kb on - strand, within GFF1157at 9.838 kb on + strand, within GFF1157at 9.924 kb on + strand, within GFF1157at 9.925 kb on - strand, within GFF1157at 9.925 kb on - strand, within GFF1157at 10.001 kb on + strand, within GFF1157at 10.045 kb on - strand, within GFF1157at 10.120 kb on - strand, within GFF1157at 10.201 kb on + strandat 10.202 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with P22_phage 15 MOI
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7,946 - -1.6
8,021 - -3.4
8,063 - -0.7
8,067 - +1.1
8,068 + +0.1
8,877 - +0.4
8,919 + +0.1
8,982 + GFF1155 0.17 -0.4
8,982 + GFF1155 0.17 -0.6
8,982 + GFF1155 0.17 -3.5
9,194 - GFF1155 0.75 -2.1
9,194 - GFF1155 0.75 -0.9
9,261 + -0.3
9,290 + +1.1
9,327 + -0.8
9,389 - GFF1156 0.29 +0.6
9,537 - GFF1156 0.77 -1.9
9,537 - GFF1156 0.77 +1.1
9,602 + -0.0
9,740 + GFF1157 0.19 -1.9
9,783 - GFF1157 0.27 -0.1
9,783 - GFF1157 0.27 +0.9
9,791 + GFF1157 0.28 -0.5
9,834 + GFF1157 0.36 +1.2
9,835 - GFF1157 0.36 -0.5
9,838 + GFF1157 0.37 -2.4
9,924 + GFF1157 0.52 +0.2
9,925 - GFF1157 0.52 -0.9
9,925 - GFF1157 0.52 +0.4
10,001 + GFF1157 0.65 +0.3
10,045 - GFF1157 0.73 -0.2
10,120 - GFF1157 0.86 -1.9
10,201 + -0.6
10,202 - +0.6

Or see this region's nucleotide sequence