Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1152

Experiment: LB_plus_SM_buffer with P22_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1149 and GFF1150 are separated by 103 nucleotidesGFF1150 and GFF1151 are separated by 41 nucleotidesGFF1151 and GFF1152 are separated by 310 nucleotidesGFF1152 and GFF1153 are separated by 414 nucleotides GFF1149 - unnamed protein product, at 5,338 to 5,553 GFF1149 GFF1150 - unnamed protein product, at 5,657 to 5,890 GFF1150 GFF1151 - FIG01047736: hypothetical protein, at 5,932 to 6,102 GFF1151 GFF1152 - X polypeptide, at 6,413 to 6,883 GFF1152 GFF1153 - IncF plasmid conjugative transfer mating signal transduction protein TraM, at 7,298 to 7,678 GFF1153 Position (kb) 6 7Strain fitness (log2 ratio) -3 -2 -1 0 1at 5.421 kb on + strand, within GFF1149at 5.504 kb on + strand, within GFF1149at 5.529 kb on + strand, within GFF1149at 5.618 kb on - strandat 5.667 kb on - strandat 5.689 kb on - strand, within GFF1150at 5.942 kb on + strandat 5.943 kb on - strandat 6.109 kb on - strandat 6.143 kb on + strandat 6.179 kb on - strandat 6.236 kb on - strandat 6.604 kb on - strand, within GFF1152at 7.849 kb on - strandat 7.871 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with P22_phage 15 MOI
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5,421 + GFF1149 0.38 -0.9
5,504 + GFF1149 0.77 -0.9
5,529 + GFF1149 0.88 -0.3
5,618 - -0.2
5,667 - +0.2
5,689 - GFF1150 0.14 -0.7
5,942 + +0.3
5,943 - -2.9
6,109 - +0.1
6,143 + -0.3
6,179 - -0.4
6,236 - +1.1
6,604 - GFF1152 0.41 -1.5
7,849 - -0.2
7,871 - +0.6

Or see this region's nucleotide sequence