Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0830

Experiment: nitrate (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0829 and Echvi_0830 are separated by 191 nucleotidesEchvi_0830 and Echvi_0831 are separated by 18 nucleotidesEchvi_0831 and Echvi_0832 are separated by 10 nucleotides Echvi_0829: Echvi_0829 - Membrane-associated phospholipid phosphatase, at 945,802 to 946,518 _0829 Echvi_0830: Echvi_0830 - 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family, at 946,710 to 948,221 _0830 Echvi_0831: Echvi_0831 - hypothetical protein, at 948,240 to 948,746 _0831 Echvi_0832: Echvi_0832 - hypothetical protein, at 948,757 to 949,425 _0832 Position (kb) 946 947 948 949Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 945.751 kb on + strandat 945.752 kb on - strandat 945.752 kb on - strandat 945.764 kb on - strandat 945.830 kb on - strandat 945.855 kb on + strandat 945.898 kb on + strand, within Echvi_0829at 945.992 kb on + strand, within Echvi_0829at 946.002 kb on - strand, within Echvi_0829at 946.010 kb on - strand, within Echvi_0829at 946.080 kb on - strand, within Echvi_0829at 946.148 kb on + strand, within Echvi_0829at 946.277 kb on + strand, within Echvi_0829at 946.401 kb on + strand, within Echvi_0829at 946.428 kb on - strand, within Echvi_0829at 946.461 kb on + strandat 946.525 kb on + strandat 946.525 kb on + strandat 946.525 kb on + strandat 946.526 kb on - strandat 946.632 kb on + strandat 946.632 kb on + strandat 946.633 kb on - strandat 946.682 kb on + strandat 946.682 kb on + strandat 946.682 kb on + strandat 946.683 kb on - strandat 946.784 kb on + strandat 946.828 kb on - strandat 946.861 kb on - strandat 946.864 kb on - strand, within Echvi_0830at 946.891 kb on - strand, within Echvi_0830at 946.893 kb on - strand, within Echvi_0830at 946.893 kb on - strand, within Echvi_0830at 946.898 kb on + strand, within Echvi_0830at 946.898 kb on + strand, within Echvi_0830at 946.899 kb on - strand, within Echvi_0830at 946.923 kb on - strand, within Echvi_0830at 946.938 kb on - strand, within Echvi_0830at 946.942 kb on + strand, within Echvi_0830at 946.943 kb on - strand, within Echvi_0830at 947.005 kb on - strand, within Echvi_0830at 947.005 kb on - strand, within Echvi_0830at 947.058 kb on + strand, within Echvi_0830at 947.059 kb on - strand, within Echvi_0830at 947.059 kb on - strand, within Echvi_0830at 947.119 kb on + strand, within Echvi_0830at 947.127 kb on + strand, within Echvi_0830at 947.224 kb on + strand, within Echvi_0830at 947.224 kb on + strand, within Echvi_0830at 947.224 kb on + strand, within Echvi_0830at 947.224 kb on + strand, within Echvi_0830at 947.224 kb on + strand, within Echvi_0830at 947.225 kb on - strand, within Echvi_0830at 947.232 kb on - strand, within Echvi_0830at 947.264 kb on - strand, within Echvi_0830at 947.295 kb on + strand, within Echvi_0830at 947.296 kb on - strand, within Echvi_0830at 947.296 kb on - strand, within Echvi_0830at 947.301 kb on + strand, within Echvi_0830at 947.399 kb on - strand, within Echvi_0830at 947.399 kb on - strand, within Echvi_0830at 947.442 kb on + strand, within Echvi_0830at 947.443 kb on - strand, within Echvi_0830at 947.454 kb on + strand, within Echvi_0830at 947.455 kb on - strand, within Echvi_0830at 947.477 kb on + strand, within Echvi_0830at 947.478 kb on - strand, within Echvi_0830at 947.492 kb on + strand, within Echvi_0830at 947.501 kb on + strand, within Echvi_0830at 947.532 kb on + strand, within Echvi_0830at 947.533 kb on - strand, within Echvi_0830at 947.670 kb on + strand, within Echvi_0830at 947.670 kb on + strand, within Echvi_0830at 947.706 kb on + strand, within Echvi_0830at 947.711 kb on + strand, within Echvi_0830at 947.711 kb on + strand, within Echvi_0830at 947.715 kb on + strand, within Echvi_0830at 947.716 kb on - strand, within Echvi_0830at 947.779 kb on + strand, within Echvi_0830at 947.780 kb on - strand, within Echvi_0830at 947.869 kb on + strand, within Echvi_0830at 947.885 kb on - strand, within Echvi_0830at 947.897 kb on + strand, within Echvi_0830at 947.897 kb on + strand, within Echvi_0830at 948.039 kb on + strand, within Echvi_0830at 948.039 kb on + strand, within Echvi_0830at 948.040 kb on - strand, within Echvi_0830at 948.065 kb on + strand, within Echvi_0830at 948.086 kb on - strandat 948.135 kb on + strandat 948.135 kb on + strandat 948.135 kb on + strandat 948.135 kb on + strandat 948.147 kb on - strandat 948.161 kb on + strandat 948.161 kb on + strandat 948.161 kb on + strandat 948.162 kb on - strandat 948.166 kb on + strandat 948.172 kb on + strandat 948.172 kb on + strandat 948.173 kb on - strandat 948.173 kb on - strandat 948.173 kb on - strandat 948.173 kb on - strandat 948.174 kb on + strandat 948.174 kb on + strandat 948.175 kb on - strandat 948.175 kb on - strandat 948.184 kb on + strandat 948.184 kb on + strandat 948.184 kb on + strandat 948.185 kb on - strandat 948.220 kb on - strandat 948.241 kb on + strandat 948.353 kb on + strand, within Echvi_0831at 948.388 kb on + strand, within Echvi_0831at 948.394 kb on + strand, within Echvi_0831at 948.395 kb on - strand, within Echvi_0831at 948.395 kb on - strand, within Echvi_0831at 948.423 kb on - strand, within Echvi_0831at 948.454 kb on + strand, within Echvi_0831at 948.454 kb on + strand, within Echvi_0831at 948.455 kb on - strand, within Echvi_0831at 948.455 kb on - strand, within Echvi_0831at 948.498 kb on + strand, within Echvi_0831at 948.536 kb on + strand, within Echvi_0831at 948.584 kb on + strand, within Echvi_0831at 948.585 kb on - strand, within Echvi_0831at 948.589 kb on + strandat 948.589 kb on + strand, within Echvi_0831at 948.590 kb on - strand, within Echvi_0831at 948.590 kb on - strand, within Echvi_0831at 948.593 kb on + strand, within Echvi_0831at 948.594 kb on - strand, within Echvi_0831at 948.617 kb on + strand, within Echvi_0831at 948.617 kb on + strand, within Echvi_0831at 948.621 kb on + strand, within Echvi_0831at 948.621 kb on + strand, within Echvi_0831at 948.710 kb on + strandat 948.711 kb on - strandat 948.746 kb on + strandat 948.771 kb on + strandat 948.771 kb on + strandat 948.775 kb on + strandat 948.776 kb on - strandat 948.784 kb on + strandat 948.785 kb on - strandat 948.785 kb on - strandat 948.800 kb on + strandat 948.807 kb on + strandat 948.808 kb on - strandat 948.819 kb on - strandat 948.951 kb on - strand, within Echvi_0832at 949.032 kb on + strand, within Echvi_0832at 949.032 kb on + strand, within Echvi_0832at 949.033 kb on - strand, within Echvi_0832at 949.033 kb on - strand, within Echvi_0832at 949.034 kb on + strand, within Echvi_0832at 949.034 kb on + strand, within Echvi_0832at 949.034 kb on + strand, within Echvi_0832at 949.035 kb on - strand, within Echvi_0832at 949.035 kb on - strand, within Echvi_0832at 949.042 kb on - strand, within Echvi_0832at 949.042 kb on - strand, within Echvi_0832at 949.042 kb on - strand, within Echvi_0832at 949.068 kb on - strand, within Echvi_0832at 949.068 kb on - strand, within Echvi_0832at 949.076 kb on + strand, within Echvi_0832at 949.077 kb on - strand, within Echvi_0832at 949.087 kb on - strand, within Echvi_0832at 949.108 kb on - strand, within Echvi_0832at 949.145 kb on - strand, within Echvi_0832at 949.192 kb on - strand, within Echvi_0832

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrate (N)
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945,751 + -0.1
945,752 - +0.9
945,752 - +1.8
945,764 - -0.2
945,830 - +0.4
945,855 + -2.8
945,898 + Echvi_0829 0.13 -1.3
945,992 + Echvi_0829 0.26 -0.8
946,002 - Echvi_0829 0.28 -0.2
946,010 - Echvi_0829 0.29 -0.2
946,080 - Echvi_0829 0.39 +1.0
946,148 + Echvi_0829 0.48 -0.8
946,277 + Echvi_0829 0.66 -1.1
946,401 + Echvi_0829 0.84 +0.4
946,428 - Echvi_0829 0.87 +1.6
946,461 + +0.8
946,525 + -0.3
946,525 + +0.2
946,525 + -0.5
946,526 - +0.3
946,632 + +0.8
946,632 + -2.7
946,633 - +0.4
946,682 + +1.0
946,682 + -0.4
946,682 + -1.0
946,683 - +0.0
946,784 + +0.0
946,828 - -0.5
946,861 - +1.2
946,864 - Echvi_0830 0.10 +1.4
946,891 - Echvi_0830 0.12 -0.4
946,893 - Echvi_0830 0.12 +0.7
946,893 - Echvi_0830 0.12 -1.7
946,898 + Echvi_0830 0.12 +0.2
946,898 + Echvi_0830 0.12 +2.0
946,899 - Echvi_0830 0.12 +1.2
946,923 - Echvi_0830 0.14 +1.1
946,938 - Echvi_0830 0.15 +0.7
946,942 + Echvi_0830 0.15 +0.8
946,943 - Echvi_0830 0.15 +3.0
947,005 - Echvi_0830 0.20 +0.7
947,005 - Echvi_0830 0.20 +0.2
947,058 + Echvi_0830 0.23 -0.0
947,059 - Echvi_0830 0.23 +0.6
947,059 - Echvi_0830 0.23 +1.3
947,119 + Echvi_0830 0.27 -0.1
947,127 + Echvi_0830 0.28 -0.1
947,224 + Echvi_0830 0.34 +1.4
947,224 + Echvi_0830 0.34 +2.0
947,224 + Echvi_0830 0.34 -0.8
947,224 + Echvi_0830 0.34 +0.4
947,224 + Echvi_0830 0.34 +0.1
947,225 - Echvi_0830 0.34 +1.4
947,232 - Echvi_0830 0.35 -0.6
947,264 - Echvi_0830 0.37 +1.1
947,295 + Echvi_0830 0.39 -0.6
947,296 - Echvi_0830 0.39 +0.7
947,296 - Echvi_0830 0.39 +1.0
947,301 + Echvi_0830 0.39 +1.6
947,399 - Echvi_0830 0.46 +1.4
947,399 - Echvi_0830 0.46 +0.3
947,442 + Echvi_0830 0.48 +1.4
947,443 - Echvi_0830 0.48 +1.7
947,454 + Echvi_0830 0.49 +0.2
947,455 - Echvi_0830 0.49 +0.4
947,477 + Echvi_0830 0.51 +0.8
947,478 - Echvi_0830 0.51 +0.9
947,492 + Echvi_0830 0.52 -0.0
947,501 + Echvi_0830 0.52 +0.3
947,532 + Echvi_0830 0.54 +1.6
947,533 - Echvi_0830 0.54 +1.0
947,670 + Echvi_0830 0.63 +1.3
947,670 + Echvi_0830 0.63 +1.3
947,706 + Echvi_0830 0.66 -0.4
947,711 + Echvi_0830 0.66 +0.5
947,711 + Echvi_0830 0.66 -1.0
947,715 + Echvi_0830 0.66 +0.3
947,716 - Echvi_0830 0.67 +0.4
947,779 + Echvi_0830 0.71 +0.8
947,780 - Echvi_0830 0.71 +0.1
947,869 + Echvi_0830 0.77 +1.1
947,885 - Echvi_0830 0.78 -0.2
947,897 + Echvi_0830 0.79 +0.1
947,897 + Echvi_0830 0.79 +0.6
948,039 + Echvi_0830 0.88 +1.6
948,039 + Echvi_0830 0.88 +0.5
948,040 - Echvi_0830 0.88 +2.1
948,065 + Echvi_0830 0.90 -0.7
948,086 - +1.1
948,135 + +1.2
948,135 + +1.4
948,135 + +2.6
948,135 + +1.2
948,147 - +0.4
948,161 + -0.3
948,161 + +1.7
948,161 + +1.1
948,162 - +1.3
948,166 + +1.5
948,172 + +2.0
948,172 + +0.2
948,173 - +0.8
948,173 - +0.3
948,173 - +1.5
948,173 - -0.3
948,174 + +2.3
948,174 + +2.7
948,175 - +2.1
948,175 - +1.2
948,184 + -0.5
948,184 + +1.5
948,184 + +1.7
948,185 - -0.3
948,220 - -0.1
948,241 + -1.7
948,353 + Echvi_0831 0.22 -2.0
948,388 + Echvi_0831 0.29 +1.4
948,394 + Echvi_0831 0.30 -0.3
948,395 - Echvi_0831 0.31 +0.0
948,395 - Echvi_0831 0.31 -0.4
948,423 - Echvi_0831 0.36 -2.0
948,454 + Echvi_0831 0.42 -0.3
948,454 + Echvi_0831 0.42 +0.5
948,455 - Echvi_0831 0.42 -0.7
948,455 - Echvi_0831 0.42 -0.4
948,498 + Echvi_0831 0.51 -1.7
948,536 + Echvi_0831 0.58 -1.2
948,584 + Echvi_0831 0.68 -1.6
948,585 - Echvi_0831 0.68 +1.1
948,589 + +2.0
948,589 + Echvi_0831 0.69 -1.6
948,590 - Echvi_0831 0.69 +0.8
948,590 - Echvi_0831 0.69 -1.3
948,593 + Echvi_0831 0.70 +0.5
948,594 - Echvi_0831 0.70 -0.8
948,617 + Echvi_0831 0.74 -0.9
948,617 + Echvi_0831 0.74 +0.5
948,621 + Echvi_0831 0.75 -0.2
948,621 + Echvi_0831 0.75 -2.0
948,710 + -1.3
948,711 - +0.2
948,746 + +0.1
948,771 + +1.6
948,771 + -1.0
948,775 + +0.3
948,776 - +0.7
948,784 + +1.2
948,785 - +0.0
948,785 - -2.5
948,800 + -2.3
948,807 + +0.3
948,808 - -1.6
948,819 - +0.4
948,951 - Echvi_0832 0.29 +0.3
949,032 + Echvi_0832 0.41 -1.6
949,032 + Echvi_0832 0.41 -0.4
949,033 - Echvi_0832 0.41 -1.8
949,033 - Echvi_0832 0.41 -0.3
949,034 + Echvi_0832 0.41 +0.4
949,034 + Echvi_0832 0.41 -0.6
949,034 + Echvi_0832 0.41 +0.3
949,035 - Echvi_0832 0.42 -1.0
949,035 - Echvi_0832 0.42 -0.1
949,042 - Echvi_0832 0.43 +1.6
949,042 - Echvi_0832 0.43 -0.3
949,042 - Echvi_0832 0.43 -0.8
949,068 - Echvi_0832 0.46 +1.5
949,068 - Echvi_0832 0.46 -0.5
949,076 + Echvi_0832 0.48 -0.1
949,077 - Echvi_0832 0.48 +0.7
949,087 - Echvi_0832 0.49 +1.0
949,108 - Echvi_0832 0.52 -0.3
949,145 - Echvi_0832 0.58 -1.9
949,192 - Echvi_0832 0.65 +0.7

Or see this region's nucleotide sequence