Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0495 and Echvi_0496 are separated by 18 nucleotides Echvi_0496 and Echvi_0497 are separated by 198 nucleotides
Echvi_0495: Echvi_0495 - Beta-xylosidase, at 551,303 to 552,301
_0495
Echvi_0496: Echvi_0496 - Beta-xylosidase, at 552,320 to 553,318
_0496
Echvi_0497: Echvi_0497 - Beta-xylosidase, at 553,517 to 554,560
_0497
Position (kb) 552
553
554 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 551.362 kb on + strand at 551.541 kb on + strand, within Echvi_0495 at 551.541 kb on + strand, within Echvi_0495 at 551.684 kb on + strand, within Echvi_0495 at 551.687 kb on + strand, within Echvi_0495 at 551.687 kb on + strand, within Echvi_0495 at 551.688 kb on - strand, within Echvi_0495 at 551.785 kb on + strand, within Echvi_0495 at 551.787 kb on + strand, within Echvi_0495 at 551.787 kb on + strand, within Echvi_0495 at 551.788 kb on - strand, within Echvi_0495 at 551.788 kb on - strand, within Echvi_0495 at 551.900 kb on + strand, within Echvi_0495 at 551.900 kb on + strand, within Echvi_0495 at 551.900 kb on + strand, within Echvi_0495 at 551.901 kb on - strand, within Echvi_0495 at 551.901 kb on - strand, within Echvi_0495 at 551.982 kb on + strand, within Echvi_0495 at 551.983 kb on - strand, within Echvi_0495 at 551.986 kb on - strand, within Echvi_0495 at 551.986 kb on - strand, within Echvi_0495 at 551.995 kb on + strand, within Echvi_0495 at 551.997 kb on + strand, within Echvi_0495 at 551.997 kb on + strand, within Echvi_0495 at 551.997 kb on + strand, within Echvi_0495 at 551.998 kb on - strand, within Echvi_0495 at 552.133 kb on + strand, within Echvi_0495 at 552.133 kb on + strand, within Echvi_0495 at 552.134 kb on - strand, within Echvi_0495 at 552.134 kb on - strand, within Echvi_0495 at 552.134 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.136 kb on - strand, within Echvi_0495 at 552.138 kb on + strand, within Echvi_0495 at 552.138 kb on + strand, within Echvi_0495 at 552.139 kb on - strand, within Echvi_0495 at 552.139 kb on - strand, within Echvi_0495 at 552.139 kb on - strand, within Echvi_0495 at 552.164 kb on + strand, within Echvi_0495 at 552.166 kb on + strand, within Echvi_0495 at 552.167 kb on - strand, within Echvi_0495 at 552.324 kb on + strand at 552.324 kb on + strand at 552.325 kb on - strand at 552.387 kb on + strand at 552.453 kb on + strand, within Echvi_0496 at 552.453 kb on + strand, within Echvi_0496 at 552.453 kb on + strand, within Echvi_0496 at 552.454 kb on - strand, within Echvi_0496 at 552.462 kb on + strand, within Echvi_0496 at 552.463 kb on - strand, within Echvi_0496 at 552.476 kb on - strand, within Echvi_0496 at 552.502 kb on + strand, within Echvi_0496 at 552.571 kb on + strand, within Echvi_0496 at 552.572 kb on - strand, within Echvi_0496 at 552.577 kb on - strand, within Echvi_0496 at 552.618 kb on + strand, within Echvi_0496 at 552.618 kb on + strand, within Echvi_0496 at 552.618 kb on + strand, within Echvi_0496 at 552.619 kb on - strand, within Echvi_0496 at 552.619 kb on - strand, within Echvi_0496 at 552.620 kb on + strand, within Echvi_0496 at 552.709 kb on + strand, within Echvi_0496 at 552.709 kb on + strand, within Echvi_0496 at 552.709 kb on + strand, within Echvi_0496 at 552.709 kb on + strand, within Echvi_0496 at 552.710 kb on - strand, within Echvi_0496 at 552.710 kb on - strand, within Echvi_0496 at 552.718 kb on + strand, within Echvi_0496 at 552.719 kb on - strand, within Echvi_0496 at 552.729 kb on + strand, within Echvi_0496 at 552.730 kb on - strand, within Echvi_0496 at 552.730 kb on - strand, within Echvi_0496 at 552.732 kb on + strand, within Echvi_0496 at 552.733 kb on - strand, within Echvi_0496 at 552.733 kb on - strand, within Echvi_0496 at 552.733 kb on - strand, within Echvi_0496 at 552.733 kb on - strand, within Echvi_0496 at 552.929 kb on - strand, within Echvi_0496 at 552.929 kb on - strand, within Echvi_0496 at 552.930 kb on + strand, within Echvi_0496 at 552.930 kb on + strand, within Echvi_0496 at 552.931 kb on - strand, within Echvi_0496 at 552.931 kb on - strand, within Echvi_0496 at 552.936 kb on + strand, within Echvi_0496 at 552.936 kb on + strand, within Echvi_0496 at 552.936 kb on + strand, within Echvi_0496 at 552.936 kb on + strand, within Echvi_0496 at 552.936 kb on + strand, within Echvi_0496 at 552.936 kb on + strand, within Echvi_0496 at 552.937 kb on - strand, within Echvi_0496 at 552.939 kb on + strand, within Echvi_0496 at 552.940 kb on - strand, within Echvi_0496 at 552.943 kb on + strand, within Echvi_0496 at 552.944 kb on - strand, within Echvi_0496 at 552.944 kb on - strand, within Echvi_0496 at 552.972 kb on + strand, within Echvi_0496 at 552.973 kb on - strand, within Echvi_0496 at 553.081 kb on + strand, within Echvi_0496 at 553.082 kb on - strand, within Echvi_0496 at 553.119 kb on + strand, within Echvi_0496 at 553.167 kb on + strand, within Echvi_0496 at 553.167 kb on + strand, within Echvi_0496 at 553.167 kb on + strand, within Echvi_0496 at 553.168 kb on - strand, within Echvi_0496 at 553.212 kb on + strand, within Echvi_0496 at 553.212 kb on + strand, within Echvi_0496 at 553.212 kb on + strand, within Echvi_0496 at 553.213 kb on - strand, within Echvi_0496 at 553.213 kb on - strand, within Echvi_0496 at 553.233 kb on + strand at 553.234 kb on - strand at 553.234 kb on - strand at 553.234 kb on - strand at 553.268 kb on - strand at 553.311 kb on - strand at 553.326 kb on + strand at 553.346 kb on - strand at 553.349 kb on - strand at 553.349 kb on - strand at 553.379 kb on + strand at 553.466 kb on + strand at 553.466 kb on + strand at 553.466 kb on + strand at 553.467 kb on - strand at 553.467 kb on - strand at 553.562 kb on + strand at 553.563 kb on - strand at 553.600 kb on + strand at 553.601 kb on - strand at 553.667 kb on - strand, within Echvi_0497 at 553.669 kb on + strand, within Echvi_0497 at 553.669 kb on + strand, within Echvi_0497 at 553.670 kb on - strand, within Echvi_0497 at 553.683 kb on + strand, within Echvi_0497 at 553.683 kb on + strand, within Echvi_0497 at 553.684 kb on - strand, within Echvi_0497 at 553.698 kb on + strand, within Echvi_0497 at 553.708 kb on - strand, within Echvi_0497 at 553.708 kb on - strand, within Echvi_0497 at 553.736 kb on + strand, within Echvi_0497 at 553.783 kb on - strand, within Echvi_0497 at 553.783 kb on - strand, within Echvi_0497 at 553.787 kb on - strand, within Echvi_0497 at 553.795 kb on - strand, within Echvi_0497 at 553.799 kb on - strand, within Echvi_0497 at 553.876 kb on + strand, within Echvi_0497 at 553.886 kb on - strand, within Echvi_0497 at 553.908 kb on + strand, within Echvi_0497 at 553.950 kb on + strand, within Echvi_0497 at 553.950 kb on + strand, within Echvi_0497 at 553.951 kb on - strand, within Echvi_0497 at 553.951 kb on - strand, within Echvi_0497 at 553.951 kb on - strand, within Echvi_0497 at 553.951 kb on - strand, within Echvi_0497 at 554.057 kb on - strand, within Echvi_0497 at 554.071 kb on - strand, within Echvi_0497 at 554.146 kb on + strand, within Echvi_0497 at 554.146 kb on + strand, within Echvi_0497 at 554.146 kb on + strand, within Echvi_0497 at 554.146 kb on + strand, within Echvi_0497 at 554.147 kb on - strand, within Echvi_0497 at 554.160 kb on - strand, within Echvi_0497
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 551,362 + -1.8 551,541 + Echvi_0495 0.24 +0.5 551,541 + Echvi_0495 0.24 -0.9 551,684 + Echvi_0495 0.38 -1.6 551,687 + Echvi_0495 0.38 -1.0 551,687 + Echvi_0495 0.38 -0.4 551,688 - Echvi_0495 0.39 +0.1 551,785 + Echvi_0495 0.48 -0.4 551,787 + Echvi_0495 0.48 +0.1 551,787 + Echvi_0495 0.48 +1.1 551,788 - Echvi_0495 0.49 -0.3 551,788 - Echvi_0495 0.49 -2.2 551,900 + Echvi_0495 0.60 -1.0 551,900 + Echvi_0495 0.60 -0.2 551,900 + Echvi_0495 0.60 -0.9 551,901 - Echvi_0495 0.60 +0.9 551,901 - Echvi_0495 0.60 -0.7 551,982 + Echvi_0495 0.68 -0.3 551,983 - Echvi_0495 0.68 +0.5 551,986 - Echvi_0495 0.68 -0.6 551,986 - Echvi_0495 0.68 +0.3 551,995 + Echvi_0495 0.69 +0.6 551,997 + Echvi_0495 0.69 +0.2 551,997 + Echvi_0495 0.69 -0.2 551,997 + Echvi_0495 0.69 +0.1 551,998 - Echvi_0495 0.70 -0.1 552,133 + Echvi_0495 0.83 +1.2 552,133 + Echvi_0495 0.83 +0.3 552,134 - Echvi_0495 0.83 -1.4 552,134 - Echvi_0495 0.83 +0.8 552,134 - Echvi_0495 0.83 -0.6 552,136 - Echvi_0495 0.83 -0.0 552,136 - Echvi_0495 0.83 +0.1 552,136 - Echvi_0495 0.83 +1.1 552,136 - Echvi_0495 0.83 +1.3 552,136 - Echvi_0495 0.83 +1.5 552,136 - Echvi_0495 0.83 +0.8 552,138 + Echvi_0495 0.84 -1.9 552,138 + Echvi_0495 0.84 -1.4 552,139 - Echvi_0495 0.84 +0.4 552,139 - Echvi_0495 0.84 +0.2 552,139 - Echvi_0495 0.84 -0.1 552,164 + Echvi_0495 0.86 -0.7 552,166 + Echvi_0495 0.86 +0.1 552,167 - Echvi_0495 0.86 -0.4 552,324 + -1.1 552,324 + +0.6 552,325 - -0.6 552,387 + -0.3 552,453 + Echvi_0496 0.13 +1.9 552,453 + Echvi_0496 0.13 +0.5 552,453 + Echvi_0496 0.13 +0.7 552,454 - Echvi_0496 0.13 -0.3 552,462 + Echvi_0496 0.14 +1.7 552,463 - Echvi_0496 0.14 -0.7 552,476 - Echvi_0496 0.16 +0.2 552,502 + Echvi_0496 0.18 -0.3 552,571 + Echvi_0496 0.25 -0.8 552,572 - Echvi_0496 0.25 +0.4 552,577 - Echvi_0496 0.26 +0.1 552,618 + Echvi_0496 0.30 +0.3 552,618 + Echvi_0496 0.30 -1.1 552,618 + Echvi_0496 0.30 -0.6 552,619 - Echvi_0496 0.30 +0.8 552,619 - Echvi_0496 0.30 +1.8 552,620 + Echvi_0496 0.30 +0.8 552,709 + Echvi_0496 0.39 -2.1 552,709 + Echvi_0496 0.39 +0.3 552,709 + Echvi_0496 0.39 -1.9 552,709 + Echvi_0496 0.39 -0.3 552,710 - Echvi_0496 0.39 -0.3 552,710 - Echvi_0496 0.39 +1.3 552,718 + Echvi_0496 0.40 -1.4 552,719 - Echvi_0496 0.40 +0.5 552,729 + Echvi_0496 0.41 +0.1 552,730 - Echvi_0496 0.41 -1.8 552,730 - Echvi_0496 0.41 +0.5 552,732 + Echvi_0496 0.41 +0.9 552,733 - Echvi_0496 0.41 -0.1 552,733 - Echvi_0496 0.41 +0.7 552,733 - Echvi_0496 0.41 +0.2 552,733 - Echvi_0496 0.41 +1.3 552,929 - Echvi_0496 0.61 -0.6 552,929 - Echvi_0496 0.61 -0.8 552,930 + Echvi_0496 0.61 +0.7 552,930 + Echvi_0496 0.61 +0.2 552,931 - Echvi_0496 0.61 +0.1 552,931 - Echvi_0496 0.61 -0.6 552,936 + Echvi_0496 0.62 -1.9 552,936 + Echvi_0496 0.62 +0.7 552,936 + Echvi_0496 0.62 +1.7 552,936 + Echvi_0496 0.62 -1.7 552,936 + Echvi_0496 0.62 -0.5 552,936 + Echvi_0496 0.62 +0.5 552,937 - Echvi_0496 0.62 -0.3 552,939 + Echvi_0496 0.62 -2.0 552,940 - Echvi_0496 0.62 +1.7 552,943 + Echvi_0496 0.62 -0.7 552,944 - Echvi_0496 0.62 +1.3 552,944 - Echvi_0496 0.62 -0.7 552,972 + Echvi_0496 0.65 -1.0 552,973 - Echvi_0496 0.65 -0.8 553,081 + Echvi_0496 0.76 +0.3 553,082 - Echvi_0496 0.76 -0.2 553,119 + Echvi_0496 0.80 +0.6 553,167 + Echvi_0496 0.85 -1.8 553,167 + Echvi_0496 0.85 +0.1 553,167 + Echvi_0496 0.85 -2.0 553,168 - Echvi_0496 0.85 +1.1 553,212 + Echvi_0496 0.89 +0.2 553,212 + Echvi_0496 0.89 +0.3 553,212 + Echvi_0496 0.89 +0.3 553,213 - Echvi_0496 0.89 -0.0 553,213 - Echvi_0496 0.89 +0.8 553,233 + -1.6 553,234 - -0.9 553,234 - +1.3 553,234 - +0.6 553,268 - -0.5 553,311 - -2.8 553,326 + -1.0 553,346 - -1.5 553,349 - +0.7 553,349 - +0.1 553,379 + +0.7 553,466 + +0.1 553,466 + -2.1 553,466 + +0.2 553,467 - +0.1 553,467 - +0.4 553,562 + +0.5 553,563 - -1.3 553,600 + -0.4 553,601 - -0.9 553,667 - Echvi_0497 0.14 +0.4 553,669 + Echvi_0497 0.15 +1.2 553,669 + Echvi_0497 0.15 +0.5 553,670 - Echvi_0497 0.15 -1.2 553,683 + Echvi_0497 0.16 +1.2 553,683 + Echvi_0497 0.16 -0.8 553,684 - Echvi_0497 0.16 -0.9 553,698 + Echvi_0497 0.17 -1.3 553,708 - Echvi_0497 0.18 -0.5 553,708 - Echvi_0497 0.18 +0.7 553,736 + Echvi_0497 0.21 +2.5 553,783 - Echvi_0497 0.25 -1.8 553,783 - Echvi_0497 0.25 -0.4 553,787 - Echvi_0497 0.26 -1.2 553,795 - Echvi_0497 0.27 -1.4 553,799 - Echvi_0497 0.27 -2.2 553,876 + Echvi_0497 0.34 +0.3 553,886 - Echvi_0497 0.35 +1.1 553,908 + Echvi_0497 0.37 -1.3 553,950 + Echvi_0497 0.41 -0.1 553,950 + Echvi_0497 0.41 -1.1 553,951 - Echvi_0497 0.42 +0.8 553,951 - Echvi_0497 0.42 -1.9 553,951 - Echvi_0497 0.42 +0.0 553,951 - Echvi_0497 0.42 +1.1 554,057 - Echvi_0497 0.52 +0.1 554,071 - Echvi_0497 0.53 -0.7 554,146 + Echvi_0497 0.60 +1.0 554,146 + Echvi_0497 0.60 -0.4 554,146 + Echvi_0497 0.60 -0.5 554,146 + Echvi_0497 0.60 -0.5 554,147 - Echvi_0497 0.60 -0.4 554,160 - Echvi_0497 0.62 -0.0
Or see this region's nucleotide sequence